Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TCRBV7S3A2A0A539 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.84■□□□□ 0.77
TCRBV7S3A2A0A539 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.84■□□□□ 0.77
TCRBV7S3A2A0A539 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
TCRBV7S3A2A0A539 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TCRBV7S3A2A0A539 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TCRBV7S3A2A0A539 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TCRBV7S3A2A0A539 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 TSPY6P-201ENST00000448518 926 ntBASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 RPS2P52-201ENST00000469610 820 ntBASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.83■□□□□ 0.77
TCRBV7S3A2A0A539 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
TCRBV7S3A2A0A539 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
TCRBV7S3A2A0A539 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.83■□□□□ 0.76
TCRBV7S3A2A0A539 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
TCRBV7S3A2A0A539 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TCRBV7S3A2A0A539 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 NCF1B-203ENST00000435988 1254 ntBASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 AC098934.4-201ENST00000564127 592 ntBASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 ZNF815P-204ENST00000434898 1737 ntBASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TCRBV7S3A2A0A539 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 MYC-209ENST00000641252 345 ntBASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.81■□□□□ 0.76
TCRBV7S3A2A0A539 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TCRBV7S3A2A0A539 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TCRBV7S3A2A0A539 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.79■□□□□ 0.76
TCRBV7S3A2A0A539 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms