Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 ERO1YML130C 1692 nt8.78□□□□□ -1 RIP-Chip
UBP3Q01477 SWM1YDR260C 513 nt8.77□□□□□ -1.01
UBP3Q01477 SRP102YKL154W 735 nt8.77□□□□□ -1.01
UBP3Q01477 YNL165WYNL165W 1221 nt8.77□□□□□ -1.01
UBP3Q01477 YBL095WYBL095W 813 nt8.77□□□□□ -1.01 RIP-Chip
UBP3Q01477 MEX67YPL169C 1800 nt8.77□□□□□ -1.01
UBP3Q01477 BNS1YGR230W 414 nt8.76□□□□□ -1.01
UBP3Q01477 SAM50YNL026W 1455 nt8.76□□□□□ -1.01 RIP-Chip
UBP3Q01477 YGR210CYGR210C 1236 nt8.75□□□□□ -1.01 RIP-Chip
UBP3Q01477 SRN2YLR119W 642 nt8.75□□□□□ -1.01 RIP-Chip
UBP3Q01477 MAK32YCR019W 1092 nt8.73□□□□□ -1.01 RIP-Chip
UBP3Q01477 TGA1tA(UGC)A 73 nt8.73□□□□□ -1.01
UBP3Q01477 tA(UGC)EtA(UGC)E 73 nt8.73□□□□□ -1.01
UBP3Q01477 tA(UGC)GtA(UGC)G 73 nt8.73□□□□□ -1.01
UBP3Q01477 tA(UGC)LtA(UGC)L 73 nt8.73□□□□□ -1.01
UBP3Q01477 tA(UGC)OtA(UGC)O 73 nt8.73□□□□□ -1.01
UBP3Q01477 YMC2YBR104W 990 nt8.73□□□□□ -1.01 RIP-Chip
UBP3Q01477 YCP4YCR004C 744 nt8.72□□□□□ -1.01
UBP3Q01477 RSM7YJR113C 744 nt8.72□□□□□ -1.01 RIP-Chip
UBP3Q01477 FET5YFL041W 1869 nt8.72□□□□□ -1.01
UBP3Q01477 HTS1YPR033C 1641 nt8.72□□□□□ -1.01
UBP3Q01477 SNU66YOR308C 1764 nt8.71□□□□□ -1.01
UBP3Q01477 YIR018C-AYIR018C-A 138 nt8.71□□□□□ -1.02
UBP3Q01477 AAT1YKL106W 1356 nt8.71□□□□□ -1.02
UBP3Q01477 NSG2YNL156C 900 nt8.69□□□□□ -1.02 RIP-Chip
UBP3Q01477 SGV1YPR161C 1974 nt8.69□□□□□ -1.02 RIP-Chip
UBP3Q01477 YJL045WYJL045W 1905 nt8.68□□□□□ -1.02
UBP3Q01477 MRS4YKR052C 915 nt8.68□□□□□ -1.02
UBP3Q01477 TMS1YDR105C 1422 nt8.67□□□□□ -1.02
UBP3Q01477 LPD1YFL018C 1500 nt8.67□□□□□ -1.02
UBP3Q01477 YLR173WYLR173W 1827 nt8.67□□□□□ -1.02
UBP3Q01477 RNA170RNA170 169 nt8.67□□□□□ -1.02
UBP3Q01477 MET22YOL064C 1074 nt8.67□□□□□ -1.02
UBP3Q01477 TRP2YER090W 1524 nt8.66□□□□□ -1.02
UBP3Q01477 YPL108WYPL108W 507 nt8.66□□□□□ -1.02 RIP-Chip
UBP3Q01477 NBA1YOL070C 1506 nt8.65□□□□□ -1.02
UBP3Q01477 YJL211CYJL211C 444 nt8.65□□□□□ -1.02
UBP3Q01477 YRF1-2YER190W 5046 nt8.64□□□□□ -1.03
UBP3Q01477 UFD1YGR048W 1086 nt8.64□□□□□ -1.03
UBP3Q01477 YJR149WYJR149W 1215 nt8.64□□□□□ -1.03
UBP3Q01477 YNL067W-AYNL067W-A 147 nt8.64□□□□□ -1.03
UBP3Q01477 FCY1YPR062W 477 nt8.64□□□□□ -1.03
UBP3Q01477 YLR072WYLR072W 2082 nt8.63□□□□□ -1.03 RIP-Chip
UBP3Q01477 THI6YPL214C 1623 nt8.63□□□□□ -1.03 RIP-Chip
UBP3Q01477 ALR1YOL130W 2580 nt8.63□□□□□ -1.03
UBP3Q01477 snR86snR86 1004 nt8.62□□□□□ -1.03
UBP3Q01477 EMC3YKL207W 762 nt8.62□□□□□ -1.03 RIP-Chip
UBP3Q01477 YBR056WYBR056W 1506 nt8.62□□□□□ -1.03
UBP3Q01477 CAK1YFL029C 1107 nt8.61□□□□□ -1.03
UBP3Q01477 YMR166CYMR166C 1107 nt8.61□□□□□ -1.03
UBP3Q01477 YOR300WYOR300W 309 nt8.61□□□□□ -1.03
UBP3Q01477 LSP1YPL004C 1026 nt8.61□□□□□ -1.03
UBP3Q01477 MEP1YGR121C 1479 nt8.61□□□□□ -1.03
UBP3Q01477 OCH1YGL038C 1443 nt8.61□□□□□ -1.03
UBP3Q01477 YIR035CYIR035C 765 nt8.6□□□□□ -1.03 RIP-Chip
UBP3Q01477 YLR460CYLR460C 1131 nt8.6□□□□□ -1.03
UBP3Q01477 HXT11YOL156W 1704 nt8.6□□□□□ -1.03
UBP3Q01477 PDC6YGR087C 1692 nt8.59□□□□□ -1.03 RIP-Chip
UBP3Q01477 SNU71YGR013W 1863 nt8.58□□□□□ -1.04
UBP3Q01477 YJL160CYJL160C 864 nt8.58□□□□□ -1.04
UBP3Q01477 YMR007WYMR007W 381 nt8.58□□□□□ -1.04
UBP3Q01477 BUB2YMR055C 921 nt8.58□□□□□ -1.04
UBP3Q01477 PET18YCR020C 648 nt8.57□□□□□ -1.04 RIP-Chip
UBP3Q01477 CHS7YHR142W 951 nt8.57□□□□□ -1.04
UBP3Q01477 YJL009WYJL009W 327 nt8.57□□□□□ -1.04
UBP3Q01477 EEB1YPL095C 1371 nt8.57□□□□□ -1.04
UBP3Q01477 SRM1YGL097W 1449 nt8.55□□□□□ -1.04
UBP3Q01477 ADE2YOR128C 1716 nt8.55□□□□□ -1.04 RIP-Chip
UBP3Q01477 YIA6YIL006W 1122 nt8.55□□□□□ -1.04
UBP3Q01477 RRT14YIL127C 621 nt8.55□□□□□ -1.04
UBP3Q01477 RIB1YBL033C 1038 nt8.54□□□□□ -1.04
UBP3Q01477 OLA1YBR025C 1185 nt8.54□□□□□ -1.04
UBP3Q01477 ABP1YCR088W 1779 nt8.53□□□□□ -1.04 RIP-Chip
UBP3Q01477 RTG2YGL252C 1767 nt8.53□□□□□ -1.04
UBP3Q01477 YMR210WYMR210W 1350 nt8.51□□□□□ -1.05
UBP3Q01477 SWP1YMR149W 861 nt8.51□□□□□ -1.05 RIP-Chip
UBP3Q01477 YHM2YMR241W 945 nt8.51□□□□□ -1.05
UBP3Q01477 CIT3YPR001W 1461 nt8.51□□□□□ -1.05
UBP3Q01477 EHT1YBR177C 1356 nt8.5□□□□□ -1.05
UBP3Q01477 EHD3YDR036C 1503 nt8.5□□□□□ -1.05
UBP3Q01477 SHC1YER096W 1539 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)BtD(GUC)B 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)DtD(GUC)D 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)G1tD(GUC)G1 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)G2tD(GUC)G2 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)I1tD(GUC)I1 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)I2tD(GUC)I2 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)J1tD(GUC)J1 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)J2tD(GUC)J2 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)J3tD(GUC)J3 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)J4tD(GUC)J4 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)KtD(GUC)K 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)L1tD(GUC)L1 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)L2tD(GUC)L2 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)MtD(GUC)M 72 nt8.5□□□□□ -1.05
UBP3Q01477 tD(GUC)OtD(GUC)O 72 nt8.5□□□□□ -1.05
UBP3Q01477 FIT1YDR534C 1587 nt8.5□□□□□ -1.05
UBP3Q01477 SOD2YHR008C 702 nt8.5□□□□□ -1.05
UBP3Q01477 ERG6YML008C 1152 nt8.5□□□□□ -1.05 RIP-Chip
UBP3Q01477 LEA1YPL213W 717 nt8.5□□□□□ -1.05
Retrieved 100 of 7,029 protein–RNA pairs in 11.4 ms