Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
SOX3P41225 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
SOX3P41225 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SOX3P41225 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
SOX3P41225 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
SOX3P41225 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.96■■□□□ 1.43
SOX3P41225 AC127502.1-201ENST00000399971 1502 ntBASIC23.96■■□□□ 1.43
SOX3P41225 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.96■■□□□ 1.43
SOX3P41225 LINC01971-201ENST00000617888 1048 ntBASIC23.96■■□□□ 1.43
SOX3P41225 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC23.95■■□□□ 1.43
SOX3P41225 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
SOX3P41225 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.95■■□□□ 1.42
SOX3P41225 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
SOX3P41225 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
SOX3P41225 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.94■■□□□ 1.42
SOX3P41225 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SOX3P41225 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SOX3P41225 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SOX3P41225 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SOX3P41225 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
SOX3P41225 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SOX3P41225 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.92■■□□□ 1.42
SOX3P41225 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.92■■□□□ 1.42
SOX3P41225 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SOX3P41225 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.91■■□□□ 1.42
SOX3P41225 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.91■■□□□ 1.42
SOX3P41225 DUX4L11-201ENST00000611504 1267 ntBASIC23.91■■□□□ 1.42
SOX3P41225 DUX4L12-201ENST00000614593 1267 ntBASIC23.91■■□□□ 1.42
SOX3P41225 DUX4L14-201ENST00000621227 1267 ntBASIC23.91■■□□□ 1.42
SOX3P41225 LINC00273-201ENST00000539813 1452 ntBASIC23.9■■□□□ 1.42
SOX3P41225 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SOX3P41225 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.9■■□□□ 1.42
SOX3P41225 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SOX3P41225 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SOX3P41225 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SOX3P41225 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.89■■□□□ 1.42
SOX3P41225 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SOX3P41225 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
SOX3P41225 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.88■■□□□ 1.41
SOX3P41225 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SOX3P41225 HLA-V-202ENST00000446817 847 ntBASIC23.87■■□□□ 1.41
SOX3P41225 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.87■■□□□ 1.41
SOX3P41225 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.87■■□□□ 1.41
SOX3P41225 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.86■■□□□ 1.41
SOX3P41225 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SOX3P41225 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SOX3P41225 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SOX3P41225 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.85■■□□□ 1.41
SOX3P41225 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SOX3P41225 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SOX3P41225 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.84■■□□□ 1.41
SOX3P41225 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.84■■□□□ 1.41
SOX3P41225 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.84■■□□□ 1.41
SOX3P41225 AC142086.6-201ENST00000621154 1765 ntBASIC23.83■■□□□ 1.41
SOX3P41225 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.83■■□□□ 1.41
SOX3P41225 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.83■■□□□ 1.41
SOX3P41225 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SOX3P41225 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.83■■□□□ 1.41
SOX3P41225 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SOX3P41225 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.4
SOX3P41225 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.82■■□□□ 1.4
SOX3P41225 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.82■■□□□ 1.4
SOX3P41225 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.82■■□□□ 1.4
SOX3P41225 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SOX3P41225 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SOX3P41225 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.82■■□□□ 1.4
SOX3P41225 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SOX3P41225 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SOX3P41225 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
SOX3P41225 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.81■■□□□ 1.4
SOX3P41225 MIR3648-2-201ENST00000581792 180 ntBASIC23.81■■□□□ 1.4
SOX3P41225 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.81■■□□□ 1.4
SOX3P41225 MIR3648-1-201ENST00000615959 180 ntBASIC23.81■■□□□ 1.4
SOX3P41225 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.81■■□□□ 1.4
SOX3P41225 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
SOX3P41225 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.81■■□□□ 1.4
SOX3P41225 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SOX3P41225 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SOX3P41225 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.8■■□□□ 1.4
SOX3P41225 CR559946.2-201ENST00000623684 991 ntBASIC23.8■■□□□ 1.4
SOX3P41225 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
SOX3P41225 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SOX3P41225 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SOX3P41225 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
SOX3P41225 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SOX3P41225 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
SOX3P41225 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SOX3P41225 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SOX3P41225 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SOX3P41225 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SOX3P41225 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SOX3P41225 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L13-201ENST00000554103 1267 ntBASIC23.78■■□□□ 1.4
SOX3P41225 AC016575.1-201ENST00000607026 382 ntBASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L15-201ENST00000611059 1267 ntBASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L23-201ENST00000615195 1269 ntBASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L24-201ENST00000617576 1269 ntBASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L22-201ENST00000618238 1269 ntBASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L20-201ENST00000619712 1269 ntBASIC23.78■■□□□ 1.4
SOX3P41225 DUX4L21-201ENST00000622058 1269 ntBASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 436.5 ms