Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC007996.1-201ENST00000620414 2821 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC092451.3-201ENST00000625067 1343 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC093591.2-201ENST00000565254 3843 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 RNU6-249P-201ENST00000363016 102 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 MIR589-201ENST00000385238 99 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 RNU2-72P-201ENST00000411175 163 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AL807761.1-201ENST00000417622 171 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC073464.3-201ENST00000422564 712 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 ARAFP2-201ENST00000440565 559 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AL049829.1-201ENST00000465411 156 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC006463.2-201ENST00000473326 348 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC098583.1-201ENST00000480875 255 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC140172.1-201ENST00000502928 141 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 OR7E128P-201ENST00000532736 1024 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC137768.1-201ENST00000549998 553 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AL133247.2-201ENST00000603236 482 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AL159169.2-201ENST00000610061 1269 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 RMST_5.1-201ENST00000618704 126 ntBASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.99□□□□□ -1.61
CCDC3Q9BQI4 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC107021.2-201ENST00000567714 2095 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AL034549.2-201ENST00000618285 3373 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC010132.2-201ENST00000295493 1043 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 SNORD51.1-201ENST00000365405 77 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 MIR421-201ENST00000365696 85 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AL672167.2-201ENST00000377164 879 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 RNA5SP87-201ENST00000384155 118 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AL354766.1-201ENST00000423396 542 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AL390879.2-203ENST00000426943 1121 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 RPL34P20-201ENST00000442771 351 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC108751.3-201ENST00000461814 1020 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC104629.2-201ENST00000468627 598 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 COX6B1P5-201ENST00000509843 249 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 BTF3P13-201ENST00000513224 490 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC016550.3-201ENST00000515706 767 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AL671862.1-201ENST00000515851 349 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 RNU6-889P-201ENST00000517189 103 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC021006.3-201ENST00000530771 192 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC009117.1-201ENST00000563948 554 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 RN7SL290P-201ENST00000578661 300 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 OR4H6P-202ENST00000603819 340 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AL031320.1-201ENST00000604177 357 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AC007423.1-201ENST00000605009 627 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 AL162574.1-201ENST00000615702 950 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC3Q9BQI4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms