Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RN7SL776P-201ENST00000493390 268 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC019235.1-201ENST00000503847 207 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC010409.2-201ENST00000505780 478 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC105914.1-201ENST00000511798 226 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 RN7SKP242-201ENST00000515967 289 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 RN7SKP233-201ENST00000517005 110 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 COX6CP8-201ENST00000522620 226 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AP000859.1-201ENST00000525536 307 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AP001803.1-201ENST00000525668 147 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AP001893.2-201ENST00000526949 202 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AK6P1-201ENST00000540219 478 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC092821.2-201ENST00000545710 2042 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 NPM1P42-201ENST00000560329 862 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 RN7SL42P-201ENST00000579786 294 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL031429.2-201ENST00000602605 649 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 SUGT1P3-202ENST00000604259 383 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL161734.1-201ENST00000609720 557 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AL161420.1-201ENST00000619393 264 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC087894.3-201ENST00000623682 349 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC011471.4-201ENST00000638271 216 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 SLAMF1-202ENST00000302035 4006 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 SPATA31C1-201ENST00000420021 3895 ntBASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC5.44□□□□□ -1.54
CCDC140Q96MF4 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LARS-212ENST00000510191 3737 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 EEF1A1P16-201ENST00000325349 1414 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RPL12P13-201ENST00000310055 497 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RNU6-797P-201ENST00000363101 109 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RNU6-876P-201ENST00000391295 104 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 RPL9P21-201ENST00000392269 505 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AL590095.1-201ENST00000420049 436 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AL359633.1-201ENST00000421403 310 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 CHCHD3P1-201ENST00000425516 676 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 TIMM9P3-201ENST00000428659 274 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC245452.2-201ENST00000435222 392 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC140Q96MF4 DPPA3P1-201ENST00000448050 469 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 AC079448.1-201ENST00000449377 373 ntBASIC5.43□□□□□ -1.54
CCDC140Q96MF4 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms