Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL8A1P27658 RNU6-223P-201ENST00000362830 107 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 RNU6-282P-201ENST00000365357 103 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 RNU6-809P-201ENST00000384461 107 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 MIR525-201ENST00000384978 85 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 RNA5SP53-201ENST00000391299 120 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AL161909.1-201ENST00000397390 712 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 RPS4XP8-201ENST00000402039 771 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 VIM2P-201ENST00000402383 1294 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 NPM1P38-201ENST00000403835 865 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 DPY19L1P2-201ENST00000426647 915 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC005033.1-201ENST00000428904 813 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 AC099563.1-201ENST00000456086 418 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6.39□□□□□ -1.39
COL8A1P27658 RN7SL83P-201ENST00000468131 297 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.39□□□□□ -1.39
COL8A1P27658 RPL12P20-201ENST00000475538 479 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC012181.1-201ENST00000479895 423 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 HMGB3P17-201ENST00000504195 649 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC108120.1-201ENST00000506543 991 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC6.39□□□□□ -1.39
COL8A1P27658 CDC42P3-201ENST00000518493 633 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC6.39□□□□□ -1.39
COL8A1P27658 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC6.39□□□□□ -1.39
COL8A1P27658 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC6.39□□□□□ -1.39
COL8A1P27658 AC026464.5-201ENST00000562497 722 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 GLUD1P2-201ENST00000583339 201 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 GLUD1P8-201ENST00000585063 203 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 AC010525.2-201ENST00000590920 195 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC6.39□□□□□ -1.39
COL8A1P27658 AP005329.3-201ENST00000609924 686 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC015922.4-201ENST00000612568 690 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC078938.1-201ENST00000620993 318 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 AC067931.1-201ENST00000624190 671 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.39□□□□□ -1.39
COL8A1P27658 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 LINC00208-201ENST00000304233 2150 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 PIWIL4-201ENST00000299001 3199 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 LINC02111-201ENST00000505158 2312 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL8A1P27658 CASC19-205ENST00000641013 1411 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 GPX5-201ENST00000412168 1540 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 EXOC6-201ENST00000260762 3564 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 BDNF-213ENST00000525950 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 AL136146.1-201ENST00000529830 1667 ntBASIC6.39□□□□□ -1.39
COL8A1P27658 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL8A1P27658 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL8A1P27658 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL8A1P27658 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 PIBF1-208ENST00000617689 2882 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 KIAA1324L-203ENST00000416314 3179 ntAPPRIS P3 TSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 MEF2C-222ENST00000514028 3393 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC123769.2-201ENST00000624332 5984 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 ENSAP3-201ENST00000312710 333 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 Y_RNA.381-201ENST00000365666 102 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL8A1P27658 Y_RNA.574-201ENST00000384766 95 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 CNN3P1-201ENST00000401596 935 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AL109755.1-201ENST00000401791 649 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AL121834.1-202ENST00000404494 277 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC6.38□□□□□ -1.39
COL8A1P27658 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC6.38□□□□□ -1.39
COL8A1P27658 SRIP2-201ENST00000428470 166 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 KLF7-IT1-201ENST00000428777 655 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 OR51AB1P-201ENST00000429046 620 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 ATP5JP1-201ENST00000431631 322 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC6.38□□□□□ -1.39
COL8A1P27658 AL606489.2-201ENST00000433886 234 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AC009518.3-201ENST00000438972 253 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 AMYP1-201ENST00000440059 1023 ntBASIC6.38□□□□□ -1.39
COL8A1P27658 CBX1P1-201ENST00000440184 427 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms