Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
CHMP4AQ9BY43 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
CHMP4AQ9BY43 AC114774.1-201ENST00000507410 1770 ntBASIC6.9□□□□□ -1.31
CHMP4AQ9BY43 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
CHMP4AQ9BY43 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
CHMP4AQ9BY43 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 RNU1-149P-201ENST00000390870 161 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 SNORA48.4-201ENST00000391089 134 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 RNU4-34P-201ENST00000410431 124 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 SETP15-201ENST00000412724 337 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 SEC63P1-201ENST00000425785 1258 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC138761.5-201ENST00000433967 325 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 NDUFB4P8-201ENST00000435351 367 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 YWHAZP2-201ENST00000440317 728 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC016772.1-201ENST00000444170 1261 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 RPS26P41-201ENST00000450370 284 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 HMGB1P5-202ENST00000451497 985 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC093663.2-201ENST00000484625 313 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC090515.3-201ENST00000560431 315 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 MIR1269B-201ENST00000580405 75 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 OR7E18P-201ENST00000592589 702 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC069307.1-201ENST00000602820 447 ntBASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
CHMP4AQ9BY43 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC006206.1-201ENST00000544842 3387 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 SAGE2P-201ENST00000420011 2126 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 U3.7-201ENST00000363668 216 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 RN7SKP153-201ENST00000365026 316 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 MIR105-2-201ENST00000385083 81 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AP000357.1-201ENST00000409926 1165 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC009506.2-201ENST00000420635 840 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 RPL5P2-201ENST00000429598 854 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 OR52B5P-201ENST00000435337 951 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC023271.1-201ENST00000445936 1090 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 SYT14P1-201ENST00000481459 721 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 RPS4XP20-201ENST00000505751 772 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC008638.1-201ENST00000506035 866 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC006499.3-201ENST00000506077 748 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 SCARNA20.4-201ENST00000516969 131 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC022790.1-201ENST00000522872 204 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 OR10G5P-201ENST00000532733 358 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AP004607.2-201ENST00000533949 322 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 HAUS8P1-201ENST00000549005 542 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AL512310.9-201ENST00000553311 948 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC009027.1-201ENST00000604510 479 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC025175.1-201ENST00000606482 759 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC055764.2-201ENST00000610089 670 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AL121612.2-201ENST00000612261 482 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC104307.1-201ENST00000616142 196 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AP004607.9-201ENST00000618202 316 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 OR52B5P-202ENST00000641118 1110 ntBASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.88□□□□□ -1.31
CHMP4AQ9BY43 RNF6P1-201ENST00000444889 1784 ntBASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 AC006042.3-201ENST00000454684 1469 ntBASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 AC007529.1-201ENST00000418574 2178 ntBASIC6.87□□□□□ -1.31
CHMP4AQ9BY43 OR9K1P-201ENST00000326513 941 ntBASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms