Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 AL035407.1-201ENST00000429211 571 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC6.44□□□□□ -1.38
COL6A1P12109 AC005345.1-201ENST00000431868 217 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 CEACAMP7-201ENST00000444105 496 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 REG1CP-206ENST00000447469 496 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 HIGD1AP8-201ENST00000453927 274 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 RPL7L1P3-201ENST00000455249 689 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC6.44□□□□□ -1.38
COL6A1P12109 AC068522.1-201ENST00000482895 345 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.44□□□□□ -1.38
COL6A1P12109 OR51K1P-201ENST00000510214 950 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 TPM3P3-201ENST00000521343 354 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.44□□□□□ -1.38
COL6A1P12109 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC6.44□□□□□ -1.38
COL6A1P12109 MTCO2P15-201ENST00000532655 656 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC6.44□□□□□ -1.38
COL6A1P12109 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.44□□□□□ -1.38
COL6A1P12109 AC104229.1-201ENST00000561364 255 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AC018552.1-201ENST00000562099 811 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 OR1F2P-201ENST00000570470 933 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 GARSP1-201ENST00000570895 719 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 MIR4436B2-201ENST00000581415 91 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 MIR4436B1-201ENST00000583272 91 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.44□□□□□ -1.38
COL6A1P12109 AC079610.2-201ENST00000604818 690 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AL603755.1-201ENST00000619504 163 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 AC022079.2-201ENST00000619739 566 ntBASIC6.44□□□□□ -1.38
COL6A1P12109 GMFB-210ENST00000628554 639 ntTSL 4 BASIC6.44□□□□□ -1.38
COL6A1P12109 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.44□□□□□ -1.38
COL6A1P12109 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.44□□□□□ -1.38
COL6A1P12109 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
COL6A1P12109 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL6A1P12109 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
COL6A1P12109 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
COL6A1P12109 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 AL121950.1-201ENST00000624993 2077 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL6A1P12109 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 AC087516.1-201ENST00000561236 2428 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL6A1P12109 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 AL589647.1-201ENST00000402485 466 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 Y_RNA.599-201ENST00000410489 109 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 RPS26P13-201ENST00000419030 330 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC6.43□□□□□ -1.38
COL6A1P12109 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 AL589823.1-201ENST00000429577 183 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 AC019185.1-201ENST00000442718 389 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC6.43□□□□□ -1.38
COL6A1P12109 RPS23P9-201ENST00000448848 438 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL6A1P12109 RPL6P9-201ENST00000466502 859 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 RPL32P33-201ENST00000487023 394 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 AC093752.1-206ENST00000511823 336 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.43□□□□□ -1.38
COL6A1P12109 MRPS33P3-201ENST00000513456 322 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC6.43□□□□□ -1.38
COL6A1P12109 NAT2-202ENST00000520116 716 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 AP000676.2-201ENST00000529711 301 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 AC022832.1-201ENST00000530718 645 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 HNRNPCP1-201ENST00000556181 766 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL6A1P12109 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
COL6A1P12109 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC6.43□□□□□ -1.38
COL6A1P12109 MTCO3P22-201ENST00000603219 784 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 TUSC7.1-201ENST00000610969 165 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 AC092106.3-201ENST00000611308 722 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.43□□□□□ -1.38
COL6A1P12109 SAMMSON-209ENST00000641222 1100 ntBASIC6.43□□□□□ -1.38
COL6A1P12109 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.43□□□□□ -1.38
COL6A1P12109 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL6A1P12109 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.43□□□□□ -1.38
COL6A1P12109 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms