Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC004074.1-201ENST00000421810 1063 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AC245028.1-201ENST00000423259 256 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AC092447.2-201ENST00000435487 669 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXC4P09017 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXC4P09017 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXC4P09017 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXC4P09017 AC104849.1-201ENST00000462623 405 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AC104971.1-201ENST00000495117 578 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 MYL12BP2-201ENST00000503948 512 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 SOX5P1-201ENST00000524155 1127 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AP001880.2-201ENST00000538233 448 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AC137768.1-201ENST00000549998 553 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 CR383656.6-201ENST00000550518 394 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC4P09017 SNORA74C-1-201ENST00000580726 201 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 AC068790.7-201ENST00000602347 528 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC4P09017 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC4P09017 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC4P09017 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXC4P09017 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC4P09017 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXC4P09017 RBPJP2-201ENST00000618187 1444 ntBASIC4.79□□□□□ -1.64
HOXC4P09017 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXC4P09017 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXC4P09017 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXC4P09017 AC007382.1-201ENST00000624376 2618 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC4P09017 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC4P09017 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC4P09017 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXC4P09017 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC4P09017 AC013429.2-201ENST00000418798 781 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 RPA2P2-201ENST00000419698 796 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 LINC00993-201ENST00000420453 540 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC4P09017 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC4P09017 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC4P09017 AC092162.1-201ENST00000432828 434 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 RPL35AP21-201ENST00000437667 333 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 AC073052.1-201ENST00000440417 714 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 RPL36AP15-201ENST00000444514 266 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 AC012512.1-201ENST00000446594 718 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 RN7SL558P-201ENST00000497468 299 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 RNU1-6P-201ENST00000516290 144 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXC4P09017 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC4P09017 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXC4P09017 RN7SL802P-201ENST00000577858 299 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 RN7SL690P-201ENST00000582087 240 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 AC234771.5-201ENST00000600161 514 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 AC005229.3-201ENST00000603438 323 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 AC087283.1-201ENST00000604029 1074 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 AL161912.3-201ENST00000605404 628 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 AC125257.1-201ENST00000560400 2930 ntBASIC4.78□□□□□ -1.64
HOXC4P09017 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXC4P09017 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC4P09017 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXC4P09017 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXC4P09017 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXC4P09017 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 AC073136.1-201ENST00000449426 2884 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
HOXC4P09017 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXC4P09017 RN7SKP115-201ENST00000363177 317 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXC4P09017 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXC4P09017 AC007068.1-201ENST00000396690 844 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 AL645608.4-201ENST00000423619 154 ntBASIC4.77□□□□□ -1.65
HOXC4P09017 CYCSP11-201ENST00000436426 315 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms