Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AC009093.8-201ENST00000641769 292 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 RN7SKP153-201ENST00000365026 316 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 RPL23AP38-201ENST00000423801 469 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 PGBD4P4-201ENST00000509673 613 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 TRMT10BP1-201ENST00000519377 943 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS13AQ96RL7 AP001357.1-201ENST00000586304 1053 ntBASIC4.51□□□□□ -1.69
VPS13AQ96RL7 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 MEF2C-209ENST00000504921 7561 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC099654.3-201ENST00000447087 1546 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 SDHCP2-201ENST00000398565 501 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ARAFP2-201ENST00000440565 559 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 RPL23AP43-201ENST00000446445 471 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ABCF2P2-201ENST00000450549 296 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC012468.1-201ENST00000604888 430 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 PPFIA2-216ENST00000549396 5363 ntAPPRIS P4 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 MIR7-3-201ENST00000384898 110 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC097374.1-203ENST00000400783 485 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 LINC00993-201ENST00000420453 540 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC146944.2-203ENST00000502493 354 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC091868.1-201ENST00000508746 304 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC139495.1-202ENST00000513164 354 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 OR7E10P-201ENST00000526420 991 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AC090515.3-201ENST00000560431 315 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ICE2P1-201ENST00000512800 1849 ntBASIC4.5□□□□□ -1.69
VPS13AQ96RL7 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS13AQ96RL7 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AC017019.1-201ENST00000426129 261 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AL354984.3-201ENST00000604803 325 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AC069542.2-201ENST00000624816 216 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 ADAM24P-201ENST00000398655 2101 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 Z92545.1-201ENST00000411782 234 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AP003730.1-201ENST00000524605 285 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 AC005899.7-201ENST00000618199 588 ntBASIC4.49□□□□□ -1.69
VPS13AQ96RL7 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS13AQ96RL7 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms