Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 RNU6-1331P-201ENST00000363658 106 ntBASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AL389915.1-201ENST00000422463 466 ntBASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 MTND3P6-201ENST00000485242 339 ntBASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AGGF1P3-201ENST00000493675 1213 ntBASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AC021193.1-201ENST00000511607 420 ntBASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AL391597.1-201ENST00000618707 694 ntBASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 AC012078.1-201ENST00000405035 1646 ntBASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 TEK-205ENST00000615002 4666 ntTSL 5 BASIC9.45□□□□□ -0.9
SHROOM4Q9ULL8 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 CCT8P1-201ENST00000413611 1657 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 SNORA48.7-201ENST00000391302 135 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 RNA5SP397-201ENST00000391323 118 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AL158073.1-201ENST00000426848 1104 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 TXNP5-201ENST00000441043 315 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 RPL7AP61-201ENST00000443410 636 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AC044797.1-201ENST00000445744 679 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 RAD1P2-201ENST00000446414 663 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AC005412.2-201ENST00000492004 341 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 GOLGA5P1-201ENST00000507317 980 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 HMGB1P23-201ENST00000518743 568 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AP001880.2-201ENST00000538233 448 ntBASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
SHROOM4Q9ULL8 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 RNU6-891P-201ENST00000384280 111 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC117434.1-201ENST00000419971 836 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 IGKV1OR9-1-201ENST00000424370 284 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC021876.1-201ENST00000425959 359 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 RN7SL197P-201ENST00000466981 299 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC109327.1-201ENST00000471666 403 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC022133.1-201ENST00000490961 571 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 RN7SL244P-201ENST00000493405 297 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 RPSAP51-201ENST00000497462 645 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC069366.1-201ENST00000583159 838 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 RPL12P25-202ENST00000598100 674 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC034229.5-201ENST00000624258 185 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 OR8B1P-202ENST00000641132 1178 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC139713.2-214ENST00000642059 1811 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 AC007159.1-201ENST00000566529 4706 ntBASIC9.43□□□□□ -0.9
SHROOM4Q9ULL8 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 AL450345.1-202ENST00000605741 3881 ntBASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 RNA5SP28-201ENST00000363841 119 ntBASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC9.42□□□□□ -0.9
SHROOM4Q9ULL8 AL390316.1-201ENST00000406279 553 ntBASIC9.42□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms