Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 RN7SKP227-201ENST00000364445 330 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 RNA5SP90-201ENST00000364801 99 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 RNA5SP479-201ENST00000364858 117 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SNORD56.6-201ENST00000384569 71 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 RPL23AP59-201ENST00000399415 461 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 MTND2P40-201ENST00000436718 841 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 TXNP5-201ENST00000441043 315 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 RN7SL558P-201ENST00000497468 299 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 MIR4270-201ENST00000581799 70 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC068870.3-201ENST00000625077 2536 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC020656.2-201ENST00000613291 5309 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC092451.3-201ENST00000625067 1343 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 DDX39BP1-205ENST00000422507 192 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC073410.1-201ENST00000435125 589 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 PRPF38AP2-201ENST00000438179 851 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SNORA84-201ENST00000459229 133 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC010733.1-201ENST00000451515 401 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 OR9G4-201ENST00000302957 984 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 CHEK2P3-201ENST00000416118 248 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 RPL12P34-201ENST00000424532 479 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC007559.1-201ENST00000428736 355 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 YWHAZP2-201ENST00000440317 728 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC013356.1-201ENST00000489027 564 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 MORF4L2P1-201ENST00000503761 858 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC097173.1-201ENST00000505862 819 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC026402.1-201ENST00000513642 170 ntBASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
SYNE1Q8NF91 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 RNU6-761P-201ENST00000384148 107 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 RNA5SP332-201ENST00000391063 115 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 RPL21P126-201ENST00000470049 478 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 RN7SL244P-201ENST00000493405 297 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 AC021483.2-201ENST00000567415 758 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 GMFG-202ENST00000594700 397 ntTSL 2 BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 OR52H1-202ENST00000641796 1061 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SYNE1Q8NF91 MED28P3-201ENST00000444288 531 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 AC000111.2-201ENST00000448200 210 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 RN7SL319P-201ENST00000480656 221 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 GAPDHP62-201ENST00000515313 990 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 SCARNA13-201ENST00000516672 275 ntBASIC1.5□□□□□ -2.17
SYNE1Q8NF91 SCARNA20.4-201ENST00000516969 131 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms