Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AC068305.2-201ENST00000550567 1205 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 CR382285.1-202ENST00000604687 547 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC018462.2-201ENST00000605375 395 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC090948.2-201ENST00000607363 564 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AP000238.1-201ENST00000608759 426 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 5S_rRNA.23-201ENST00000612086 102 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 Six3os1_2.1-201ENST00000616963 217 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC073488.2-201ENST00000631903 751 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC110994.2-201ENST00000635481 492 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 TRIM51HP-202ENST00000530412 1823 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AL162171.3-201ENST00000617439 3178 ntBASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 LINC02535-201ENST00000455071 2513 ntTSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
NPAS3Q8IXF0 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC7.27□□□□□ -1.24
NPAS3Q8IXF0 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC7.27□□□□□ -1.24
NPAS3Q8IXF0 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC7.27□□□□□ -1.24
NPAS3Q8IXF0 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.24
NPAS3Q8IXF0 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 NUP58P1-201ENST00000502546 1738 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 CCDC162P-202ENST00000368966 6751 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 USP48-203ENST00000374732 3037 ntTSL 2 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 RNA5SP308-201ENST00000362532 115 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 Y_RNA.157-201ENST00000363638 102 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 SNORA64.3-201ENST00000365647 134 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 FIG4-202ENST00000368941 791 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 PARD3-204ENST00000374768 799 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 SNORA51.12-201ENST00000384448 134 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AL162578.1-201ENST00000406202 378 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AL356968.2-201ENST00000412769 1257 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 BEND7P1-201ENST00000422058 457 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 PMCHL1-202ENST00000423102 261 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC128677.1-201ENST00000436016 442 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AL831737.1-201ENST00000441288 271 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 XACT-201ENST00000468762 497 ntTSL 5 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 MTND4P17-201ENST00000470444 350 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC021146.1-201ENST00000511202 716 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC105417.1-201ENST00000514691 285 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 WDR61-205ENST00000558459 884 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 FRG2DP-202ENST00000566967 323 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 NDUFB9P1-201ENST00000604683 510 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 Z84480.1-201ENST00000605131 311 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 SNORD91A-202ENST00000609620 191 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC006924.1-201ENST00000610750 559 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC078938.1-201ENST00000620993 318 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC027559.1-201ENST00000636288 271 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC217777.1-201ENST00000570034 1471 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 NRK-204ENST00000540278 1687 ntTSL 2 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 CRYZ-201ENST00000340866 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 AC015871.4-201ENST00000624650 2260 ntBASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC7.27□□□□□ -1.25
NPAS3Q8IXF0 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.27□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms