Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNGTTP1-201ENST00000420965 728 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC066692.1-201ENST00000421721 457 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC6.77□□□□□ -1.33
SOX4Q06945 RPL7AP14-201ENST00000424041 802 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 MTCO1P3-201ENST00000429327 192 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC069154.1-201ENST00000432914 542 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC6.77□□□□□ -1.33
SOX4Q06945 MTCO2P25-201ENST00000447065 681 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AL591363.1-201ENST00000450091 483 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 HIGD1AP16-201ENST00000450986 258 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SOX4Q06945 AC115223.1-201ENST00000466377 870 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC008628.2-201ENST00000502605 298 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 UGT2A3P7-201ENST00000510485 734 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC6.77□□□□□ -1.33
SOX4Q06945 AC023632.1-201ENST00000518463 375 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC6.77□□□□□ -1.33
SOX4Q06945 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC6.77□□□□□ -1.33
SOX4Q06945 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.77□□□□□ -1.33
SOX4Q06945 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SOX4Q06945 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.77□□□□□ -1.33
SOX4Q06945 AP000860.1-201ENST00000605250 559 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC011374.2-201ENST00000607135 526 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AP003789.1-201ENST00000617737 605 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 MIR6778-201ENST00000617912 73 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC073862.4-201ENST00000622982 854 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC112204.3-201ENST00000623822 332 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC6.77□□□□□ -1.33
SOX4Q06945 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SOX4Q06945 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.77□□□□□ -1.33
SOX4Q06945 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
SOX4Q06945 AL354854.1-201ENST00000455940 1363 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 AC022905.1-201ENST00000503430 3048 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 MAPK10-287ENST00000641217 3037 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.77□□□□□ -1.33
SOX4Q06945 TEX21P-201ENST00000447107 1476 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
SOX4Q06945 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
SOX4Q06945 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
SOX4Q06945 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SOX4Q06945 AL359195.2-201ENST00000623657 4412 ntBASIC6.77□□□□□ -1.33
SOX4Q06945 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.77□□□□□ -1.33
SOX4Q06945 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.76□□□□□ -1.33
SOX4Q06945 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SOX4Q06945 AC073342.2-201ENST00000595842 1800 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.76□□□□□ -1.33
SOX4Q06945 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SOX4Q06945 NCSTNP1-201ENST00000406229 144 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AC009237.5-201ENST00000414271 501 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.76□□□□□ -1.33
SOX4Q06945 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC6.76□□□□□ -1.33
SOX4Q06945 NANOGP4-201ENST00000427230 913 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC6.76□□□□□ -1.33
SOX4Q06945 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC6.76□□□□□ -1.33
SOX4Q06945 MTND1P28-201ENST00000435623 950 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AC023141.3-201ENST00000436698 278 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 AL157827.1-201ENST00000447622 132 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AC079776.3-201ENST00000450665 370 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 OR6C5P-201ENST00000452388 923 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AC144530.1-201ENST00000452862 555 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 MTND1P11-201ENST00000456661 876 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 KLF3P2-201ENST00000465138 268 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 MTND6P8-201ENST00000503471 522 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC6.76□□□□□ -1.33
SOX4Q06945 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.76□□□□□ -1.33
SOX4Q06945 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.76□□□□□ -1.33
SOX4Q06945 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC6.76□□□□□ -1.33
SOX4Q06945 OR8L1P-201ENST00000534005 955 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AP001858.2-201ENST00000536213 601 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
SOX4Q06945 MYL2-203ENST00000548438 664 ntTSL 3 BASIC6.76□□□□□ -1.33
SOX4Q06945 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.76□□□□□ -1.33
SOX4Q06945 AL117336.2-201ENST00000602435 335 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AC087045.1-201ENST00000605856 382 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AL390208.1-201ENST00000605885 644 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AP001437.1-201ENST00000608783 456 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 MIR7159-201ENST00000620587 66 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AC004836.1-201ENST00000623032 634 ntBASIC6.76□□□□□ -1.33
SOX4Q06945 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC6.76□□□□□ -1.33
SOX4Q06945 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SOX4Q06945 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms