Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HDAC1P1-201ENST00000455482 1445 ntBASIC6.78□□□□□ -1.32
MSX1P28360 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC6.78□□□□□ -1.32
MSX1P28360 AC139491.2-201ENST00000515403 3632 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC6.78□□□□□ -1.32
MSX1P28360 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 AC104162.1-201ENST00000430831 2382 ntBASIC6.78□□□□□ -1.32
MSX1P28360 RBMX2P2-201ENST00000257020 946 ntBASIC6.78□□□□□ -1.32
MSX1P28360 MIR369-201ENST00000362155 70 ntBASIC6.78□□□□□ -1.32
MSX1P28360 Y_RNA.184-201ENST00000363884 108 ntBASIC6.78□□□□□ -1.32
MSX1P28360 Y_RNA.259-201ENST00000364619 101 ntBASIC6.78□□□□□ -1.32
MSX1P28360 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 RPS4XP8-201ENST00000402039 771 ntBASIC6.78□□□□□ -1.32
MSX1P28360 MIR1305-201ENST00000408300 86 ntBASIC6.78□□□□□ -1.32
MSX1P28360 RNU2-39P-201ENST00000410604 198 ntBASIC6.78□□□□□ -1.32
MSX1P28360 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 MTATP6P18-201ENST00000417994 673 ntBASIC6.78□□□□□ -1.32
MSX1P28360 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 RPEP2-201ENST00000432149 701 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC105052.2-201ENST00000434317 794 ntBASIC6.78□□□□□ -1.32
MSX1P28360 UBE2V1P5-201ENST00000440070 405 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC6.78□□□□□ -1.32
MSX1P28360 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 CDC42P2-201ENST00000448566 569 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
MSX1P28360 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 RNU6-261P-201ENST00000459506 102 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC008620.1-201ENST00000468453 592 ntBASIC6.78□□□□□ -1.32
MSX1P28360 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 SNORA48.10-201ENST00000516965 160 ntBASIC6.78□□□□□ -1.32
MSX1P28360 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 AC107953.1-201ENST00000522216 297 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC6.78□□□□□ -1.32
MSX1P28360 AC044860.3-201ENST00000559957 368 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 AC100830.2-201ENST00000581636 240 ntBASIC6.78□□□□□ -1.32
MSX1P28360 MIR548Y-201ENST00000582739 110 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC6.78□□□□□ -1.32
MSX1P28360 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
MSX1P28360 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 AL589765.5-201ENST00000596133 515 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC011497.2-201ENST00000600255 639 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AL953862.2-201ENST00000603089 820 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC009027.1-201ENST00000604510 479 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC016925.2-201ENST00000605108 242 ntBASIC6.78□□□□□ -1.32
MSX1P28360 BCRP9-201ENST00000605312 388 ntBASIC6.78□□□□□ -1.32
MSX1P28360 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 AC097381.3-201ENST00000608962 462 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AL355472.4-201ENST00000610233 626 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC104237.2-201ENST00000612456 443 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AL121985.2-201ENST00000621192 555 ntBASIC6.78□□□□□ -1.32
MSX1P28360 AC015908.5-201ENST00000623289 343 ntBASIC6.78□□□□□ -1.32
MSX1P28360 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 BROX-209ENST00000612948 4028 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 NPIPB5-207ENST00000451409 3660 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC6.78□□□□□ -1.32
MSX1P28360 SOCS5P5-201ENST00000402732 1586 ntBASIC6.78□□□□□ -1.32
MSX1P28360 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.32
MSX1P28360 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.32
MSX1P28360 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
MSX1P28360 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC6.77□□□□□ -1.32
MSX1P28360 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 AL034417.4-202ENST00000642135 2236 ntBASIC6.77□□□□□ -1.33
MSX1P28360 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 AP003471.1-202ENST00000319051 1988 ntBASIC6.77□□□□□ -1.33
MSX1P28360 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC6.77□□□□□ -1.33
MSX1P28360 NBPF8-201ENST00000583271 5330 ntBASIC6.77□□□□□ -1.33
MSX1P28360 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC6.77□□□□□ -1.33
MSX1P28360 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC6.77□□□□□ -1.33
MSX1P28360 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 OCM2-201ENST00000257627 696 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSX1P28360 SNORA73B-201ENST00000363217 204 ntBASIC6.77□□□□□ -1.33
MSX1P28360 RNA5SP260-201ENST00000363849 111 ntBASIC6.77□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms