Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.76□□□□□ -1.49
BDNFP23560 NF1P5-201ENST00000588287 448 ntBASIC5.76□□□□□ -1.49
BDNFP23560 AL512329.2-201ENST00000607350 548 ntBASIC5.76□□□□□ -1.49
BDNFP23560 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
BDNFP23560 AC008115.4-201ENST00000619780 775 ntBASIC5.76□□□□□ -1.49
BDNFP23560 AC090617.9-201ENST00000623751 147 ntBASIC5.76□□□□□ -1.49
BDNFP23560 OR2L1P-202ENST00000641567 1023 ntBASIC5.76□□□□□ -1.49
BDNFP23560 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.76□□□□□ -1.49
BDNFP23560 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.76□□□□□ -1.49
BDNFP23560 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
BDNFP23560 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
BDNFP23560 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
BDNFP23560 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
BDNFP23560 AC006042.3-201ENST00000454684 1469 ntBASIC5.76□□□□□ -1.49
BDNFP23560 PABPC1P6-201ENST00000445594 1829 ntBASIC5.76□□□□□ -1.49
BDNFP23560 AC004076.2-201ENST00000620532 3323 ntBASIC5.76□□□□□ -1.49
BDNFP23560 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
BDNFP23560 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
BDNFP23560 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
BDNFP23560 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 METTL21EP-201ENST00000298105 713 ntBASIC5.75□□□□□ -1.49
BDNFP23560 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
BDNFP23560 U3.7-201ENST00000363668 216 ntBASIC5.75□□□□□ -1.49
BDNFP23560 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.75□□□□□ -1.49
BDNFP23560 AL356057.1-202ENST00000402263 756 ntBASIC5.75□□□□□ -1.49
BDNFP23560 OR4K12P-201ENST00000406538 961 ntBASIC5.75□□□□□ -1.49
BDNFP23560 UBE2V1P11-201ENST00000411559 285 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.75□□□□□ -1.49
BDNFP23560 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.75□□□□□ -1.49
BDNFP23560 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.75□□□□□ -1.49
BDNFP23560 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.75□□□□□ -1.49
BDNFP23560 MTND2P8-201ENST00000450555 1025 ntBASIC5.75□□□□□ -1.49
BDNFP23560 RPL23AP23-201ENST00000452590 471 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AP000942.1-201ENST00000463969 747 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.75□□□□□ -1.49
BDNFP23560 HMGB1P44-201ENST00000508597 572 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AC013701.1-201ENST00000522657 465 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AP004607.2-201ENST00000533949 322 ntBASIC5.75□□□□□ -1.49
BDNFP23560 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AL049779.2-201ENST00000553847 315 ntBASIC5.75□□□□□ -1.49
BDNFP23560 SNRPGP1-201ENST00000553864 222 ntBASIC5.75□□□□□ -1.49
BDNFP23560 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.75□□□□□ -1.49
BDNFP23560 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.75□□□□□ -1.49
BDNFP23560 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.75□□□□□ -1.49
BDNFP23560 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.75□□□□□ -1.49
BDNFP23560 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.75□□□□□ -1.49
BDNFP23560 AP000769.2-201ENST00000602344 396 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AC018618.2-201ENST00000604770 446 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AL008729.2-201ENST00000606393 473 ntBASIC5.75□□□□□ -1.49
BDNFP23560 SDR42E1P1-201ENST00000611327 477 ntBASIC5.75□□□□□ -1.49
BDNFP23560 AC109583.2-201ENST00000617367 129 ntBASIC5.75□□□□□ -1.49
BDNFP23560 U6.48-201ENST00000618523 106 ntBASIC5.75□□□□□ -1.49
BDNFP23560 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.75□□□□□ -1.49
BDNFP23560 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC5.75□□□□□ -1.49
BDNFP23560 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.75□□□□□ -1.49
BDNFP23560 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.75□□□□□ -1.49
BDNFP23560 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
BDNFP23560 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BDNFP23560 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.74□□□□□ -1.49
BDNFP23560 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
BDNFP23560 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
BDNFP23560 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.74□□□□□ -1.49
BDNFP23560 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BDNFP23560 CASC19-260ENST00000641828 2001 ntBASIC5.74□□□□□ -1.49
BDNFP23560 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
BDNFP23560 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BDNFP23560 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
BDNFP23560 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
BDNFP23560 MIR142-201ENST00000384835 87 ntBASIC5.74□□□□□ -1.49
BDNFP23560 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
BDNFP23560 RNA5SP339-201ENST00000390987 122 ntBASIC5.74□□□□□ -1.49
BDNFP23560 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
BDNFP23560 RN7SKP17-201ENST00000411242 351 ntBASIC5.74□□□□□ -1.49
BDNFP23560 SLC35E1P1-201ENST00000419313 864 ntBASIC5.74□□□□□ -1.49
BDNFP23560 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.74□□□□□ -1.49
BDNFP23560 AC097499.1-201ENST00000444277 208 ntBASIC5.74□□□□□ -1.49
BDNFP23560 SUMO2P1-206ENST00000445436 284 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms