Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC015722.2-201ENST00000622210 551 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 TAF1L-201ENST00000242310 6216 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 RNA5SP124-201ENST00000362739 110 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC009238.2-201ENST00000431026 355 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 DHFRP3-201ENST00000455595 559 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC022146.1-201ENST00000595307 847 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 OR56B2P-202ENST00000641377 2453 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC108467.2-201ENST00000617640 1597 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC007967.1-201ENST00000455422 1159 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
VPS13AQ96RL7 AC009643.2-201ENST00000603543 1448 ntBASIC4.55□□□□□ -1.68
VPS13AQ96RL7 ZNF402P-201ENST00000404435 3100 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AC092162.3-201ENST00000624511 1624 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 LINC02177-201ENST00000564305 5298 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 OR1F12-201ENST00000402365 945 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AC019176.2-201ENST00000611579 315 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 RNU6ATAC-201ENST00000408749 126 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AC096664.2-201ENST00000411843 406 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AL445584.1-201ENST00000431451 330 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AC073052.1-201ENST00000440417 714 ntBASIC4.54□□□□□ -1.68
VPS13AQ96RL7 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.54□□□□□ -1.68
VPS13AQ96RL7 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 SNORA71.2-201ENST00000364941 134 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 MIR218-2-201ENST00000385006 110 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 RN7SKP177-201ENST00000410567 355 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 NDUFB4P8-201ENST00000435351 367 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AP001160.4-201ENST00000596971 382 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 RNU4-89P-201ENST00000607443 133 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 LARP1BP1-201ENST00000506036 1359 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AL121950.1-201ENST00000624993 2077 ntBASIC4.53□□□□□ -1.68
VPS13AQ96RL7 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS13AQ96RL7 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms