Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 BGLT3-201ENST00000564523 994 ntBASIC6.19□□□□□ -1.42
RNF4P78317 PCMTD1P2-201ENST00000565017 355 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.19□□□□□ -1.42
RNF4P78317 SNORA59B-202ENST00000578183 701 ntBASIC6.19□□□□□ -1.42
RNF4P78317 ARGFXP2-201ENST00000579304 949 ntBASIC6.19□□□□□ -1.42
RNF4P78317 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 AC011921.2-201ENST00000589465 152 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AL356055.1-201ENST00000602528 446 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AL390816.3-201ENST00000604527 1066 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AL390877.1-201ENST00000605704 214 ntBASIC6.19□□□□□ -1.42
RNF4P78317 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.19□□□□□ -1.42
RNF4P78317 RNU6-84P-201ENST00000607737 102 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AL159169.3-201ENST00000608871 561 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AC025253.1-201ENST00000613623 543 ntBASIC6.19□□□□□ -1.42
RNF4P78317 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.19□□□□□ -1.42
RNF4P78317 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.19□□□□□ -1.42
RNF4P78317 MIR6503-201ENST00000622884 86 ntBASIC6.19□□□□□ -1.42
RNF4P78317 AP003400.5-201ENST00000624827 617 ntBASIC6.19□□□□□ -1.42
RNF4P78317 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 AC008957.3-201ENST00000624112 2242 ntBASIC6.19□□□□□ -1.42
RNF4P78317 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.19□□□□□ -1.42
RNF4P78317 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.19□□□□□ -1.42
RNF4P78317 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.19□□□□□ -1.42
RNF4P78317 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
RNF4P78317 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
RNF4P78317 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 RBPJP6-201ENST00000411556 1431 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AC114786.1-201ENST00000512892 1415 ntBASIC6.18□□□□□ -1.42
RNF4P78317 PHACTR2P1-201ENST00000605639 1414 ntBASIC6.18□□□□□ -1.42
RNF4P78317 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
RNF4P78317 SRGAP3-213ENST00000618999 3929 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
RNF4P78317 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
RNF4P78317 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 RNU6-619P-201ENST00000365146 108 ntBASIC6.18□□□□□ -1.42
RNF4P78317 RNA5SP88-201ENST00000365560 109 ntBASIC6.18□□□□□ -1.42
RNF4P78317 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
RNF4P78317 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
RNF4P78317 SNORD115-47-201ENST00000391226 86 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AGR3-202ENST00000402239 563 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 UBE2F-204ENST00000409953 924 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 AC002524.1-201ENST00000411687 547 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 SMARCE1P1-201ENST00000417747 1186 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 ZNF863P-201ENST00000426746 417 ntBASIC6.18□□□□□ -1.42
RNF4P78317 SKP1P3-201ENST00000429280 487 ntBASIC6.18□□□□□ -1.42
RNF4P78317 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 AC112492.2-201ENST00000432774 1030 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 AC064862.5-201ENST00000440618 334 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC6.18□□□□□ -1.42
RNF4P78317 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 DNAJB5P1-201ENST00000454004 806 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC6.18□□□□□ -1.42
RNF4P78317 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 AL603882.1-201ENST00000463059 681 ntBASIC6.18□□□□□ -1.42
RNF4P78317 KLF3P2-201ENST00000465138 268 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AL121769.1-201ENST00000469473 401 ntBASIC6.18□□□□□ -1.42
RNF4P78317 MTND6P6-201ENST00000478031 263 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AHI1-208ENST00000488690 712 ntTSL 5 BASIC6.18□□□□□ -1.42
RNF4P78317 SNRPCP11-201ENST00000492453 205 ntBASIC6.18□□□□□ -1.42
RNF4P78317 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.18□□□□□ -1.42
RNF4P78317 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
RNF4P78317 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 AC106800.2-201ENST00000514009 1103 ntBASIC6.18□□□□□ -1.42
RNF4P78317 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC6.18□□□□□ -1.42
RNF4P78317 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC6.18□□□□□ -1.42
RNF4P78317 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms