Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ARHGAP42P1-201ENST00000507474 1976 ntBASIC6.8□□□□□ -1.32
MSX1P28360 CCT8P1-201ENST00000413611 1657 ntBASIC6.8□□□□□ -1.32
MSX1P28360 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC6.8□□□□□ -1.32
MSX1P28360 SALL1P1-201ENST00000438101 3837 ntBASIC6.8□□□□□ -1.32
MSX1P28360 IFT88-201ENST00000319980 3091 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
MSX1P28360 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
MSX1P28360 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 CCL28-201ENST00000361115 3126 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
MSX1P28360 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 C7orf31-202ENST00000409280 3357 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
MSX1P28360 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
MSX1P28360 ADA2-202ENST00000330232 3195 ntTSL 2 BASIC6.79□□□□□ -1.32
MSX1P28360 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 NUMB-214ENST00000555238 3588 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 Y_RNA.381-201ENST00000365666 102 ntBASIC6.79□□□□□ -1.32
MSX1P28360 SNORA69-201ENST00000383895 132 ntBASIC6.79□□□□□ -1.32
MSX1P28360 RNU6-331P-201ENST00000384724 107 ntBASIC6.79□□□□□ -1.32
MSX1P28360 RNU6-1105P-201ENST00000384774 107 ntBASIC6.79□□□□□ -1.32
MSX1P28360 PTMAP8-201ENST00000397729 342 ntBASIC6.79□□□□□ -1.32
MSX1P28360 RPL7P58-201ENST00000402913 758 ntBASIC6.79□□□□□ -1.32
MSX1P28360 RPL5P18-201ENST00000406671 891 ntBASIC6.79□□□□□ -1.32
MSX1P28360 PPIAP30-201ENST00000415473 519 ntBASIC6.79□□□□□ -1.32
MSX1P28360 EEF1GP7-201ENST00000422983 703 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 EIF4A1P5-201ENST00000428062 1095 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 MTCO1P27-201ENST00000448269 226 ntBASIC6.79□□□□□ -1.32
MSX1P28360 BTF3P5-201ENST00000457252 467 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC096922.1-201ENST00000461635 651 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 RN7SL180P-201ENST00000466769 294 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC015820.1-201ENST00000473882 321 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC6.79□□□□□ -1.32
MSX1P28360 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 AL163540.1-201ENST00000485382 386 ntBASIC6.79□□□□□ -1.32
MSX1P28360 LINC01085-203ENST00000511195 326 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC016559.1-201ENST00000511420 199 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC011352.2-201ENST00000514574 1016 ntBASIC6.79□□□□□ -1.32
MSX1P28360 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 RNU6-123P-201ENST00000516163 102 ntBASIC6.79□□□□□ -1.32
MSX1P28360 RNU6-150P-201ENST00000516237 95 ntBASIC6.79□□□□□ -1.32
MSX1P28360 Y_RNA.691-201ENST00000516611 103 ntBASIC6.79□□□□□ -1.32
MSX1P28360 HMGB1P23-201ENST00000518743 568 ntBASIC6.79□□□□□ -1.32
MSX1P28360 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC6.79□□□□□ -1.32
MSX1P28360 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 IGKV2-29-201ENST00000521304 372 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 BMS1P15-201ENST00000554269 1141 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC6.79□□□□□ -1.32
MSX1P28360 AC138749.2-201ENST00000566048 167 ntBASIC6.79□□□□□ -1.32
MSX1P28360 RN7SL835P-201ENST00000579920 262 ntBASIC6.79□□□□□ -1.32
MSX1P28360 ZNF561-AS1-208ENST00000592851 782 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
MSX1P28360 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 7SK.7-201ENST00000603504 247 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 AC243830.2-201ENST00000618067 630 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AL121985.3-201ENST00000620690 523 ntBASIC6.79□□□□□ -1.32
MSX1P28360 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.79□□□□□ -1.32
MSX1P28360 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 ASB8-218ENST00000629941 278 ntTSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 CASC19-212ENST00000641153 1287 ntBASIC6.79□□□□□ -1.32
MSX1P28360 AC025574.1-201ENST00000554784 1653 ntBASIC6.79□□□□□ -1.32
MSX1P28360 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 MFSD6-201ENST00000281416 4608 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.79□□□□□ -1.32
MSX1P28360 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
MSX1P28360 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
MSX1P28360 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
MSX1P28360 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
MSX1P28360 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC6.78□□□□□ -1.32
MSX1P28360 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
MSX1P28360 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms