Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CAB39L-202ENST00000355854 3676 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC7.87□□□□□ -1.15
COL9A1P20849 LINC01182-202ENST00000510907 2228 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 SIDT2-219ENST00000620360 3924 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 TBPL1-201ENST00000237264 4228 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 GABRE-201ENST00000370328 3152 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 AC006213.6-201ENST00000623722 4179 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 NAV2-213ENST00000533917 5084 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 AL391666.1-201ENST00000442570 2764 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 DNAH1-201ENST00000420323 13104 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 FAM13A-205ENST00000503556 3386 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 NUMA1-232ENST00000613205 3940 ntAPPRIS ALT2 TSL 5 BASIC7.86□□□□□ -1.15
COL9A1P20849 SPATA31A6-201ENST00000332857 4209 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 LINC01910-201ENST00000582251 2637 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 NLK-201ENST00000407008 4047 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 FLI1-202ENST00000344954 3427 ntTSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 GULP1-203ENST00000409609 1932 ntAPPRIS P3 TSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
COL9A1P20849 ISX-201ENST00000308700 3384 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 SERPINA1-206ENST00000437397 3340 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 CEP44-204ENST00000457424 3290 ntTSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 AC108099.1-201ENST00000564402 3258 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 RPL32P3-201ENST00000359025 275 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 RNU6-874P-201ENST00000362390 105 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 RN7SKP208-201ENST00000365474 361 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 SNORA7B-201ENST00000384360 139 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 Y_RNA.515-201ENST00000384535 112 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 RNU1-149P-201ENST00000390870 161 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AL109755.1-201ENST00000401791 649 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 SSXP10-201ENST00000402595 565 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 RN7SKP86-201ENST00000410454 332 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 RN7SKP121-201ENST00000410842 305 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 RPS6P23-201ENST00000413224 722 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 ATP6V1G1P7-201ENST00000415853 349 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 CHIAP3-201ENST00000423668 1133 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 ATP5A1P8-201ENST00000423669 1291 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 DNAJC19P5-201ENST00000443295 316 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC7.86□□□□□ -1.15
COL9A1P20849 PPP1R8P1-201ENST00000452549 1044 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 RNU7-66P-201ENST00000459469 62 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC006512.1-201ENST00000468816 291 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 RPL23AP11-201ENST00000475260 469 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC087385.2-201ENST00000477729 498 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 RNU6-1220P-201ENST00000517126 108 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC7.86□□□□□ -1.15
COL9A1P20849 AC021001.1-201ENST00000518703 987 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7.86□□□□□ -1.15
COL9A1P20849 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC7.86□□□□□ -1.15
COL9A1P20849 AP001804.2-201ENST00000533932 910 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC7.86□□□□□ -1.15
COL9A1P20849 APPL2-203ENST00000546731 684 ntTSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 AC008126.1-201ENST00000549019 480 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC7.86□□□□□ -1.15
COL9A1P20849 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.15
COL9A1P20849 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC7.86□□□□□ -1.15
COL9A1P20849 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC7.86□□□□□ -1.15
COL9A1P20849 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC7.86□□□□□ -1.15
COL9A1P20849 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC7.86□□□□□ -1.15
COL9A1P20849 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC7.86□□□□□ -1.15
COL9A1P20849 AL683813.2-201ENST00000605245 502 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC006157.1-201ENST00000611750 366 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC098657.3-201ENST00000620434 263 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 PPP1R2-206ENST00000618156 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 MALAT1-202ENST00000534336 8708 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 GON4L-219ENST00000622608 4801 ntTSL 5 BASIC7.86□□□□□ -1.15
COL9A1P20849 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC7.86□□□□□ -1.15
COL9A1P20849 DNAH9-215ENST00000608377 3147 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 WDR11-201ENST00000263461 4732 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 API5P2-201ENST00000397055 1498 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 AC107398.3-201ENST00000562284 7000 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 TET3-202ENST00000409262 11388 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 MS4A2-204ENST00000617306 3512 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL9A1P20849 LINC02009-201ENST00000635852 2951 ntTSL 3 BASIC7.86□□□□□ -1.15
COL9A1P20849 AL355377.1-201ENST00000621125 1653 ntBASIC7.86□□□□□ -1.15
COL9A1P20849 CALML4-203ENST00000395465 4155 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL9A1P20849 SEL1L3-201ENST00000264868 4369 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL9A1P20849 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.85□□□□□ -1.15
COL9A1P20849 RNF219-201ENST00000282003 3529 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL9A1P20849 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC7.85□□□□□ -1.15
COL9A1P20849 GPC3-204ENST00000631057 1581 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL9A1P20849 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL9A1P20849 LINC00663-203ENST00000586885 2546 ntBASIC7.85□□□□□ -1.15
COL9A1P20849 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC7.85□□□□□ -1.15
COL9A1P20849 OR2V2-203ENST00000641791 4428 ntAPPRIS P1 BASIC7.85□□□□□ -1.15
COL9A1P20849 SERPINA9-202ENST00000337425 1755 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
COL9A1P20849 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC7.85□□□□□ -1.15
COL9A1P20849 NLRP3P1-201ENST00000622303 1785 ntBASIC7.85□□□□□ -1.15
COL9A1P20849 AC112255.1-201ENST00000624070 2493 ntBASIC7.85□□□□□ -1.15
COL9A1P20849 NLRP5-203ENST00000621651 3885 ntAPPRIS ALT2 TSL 5 BASIC7.85□□□□□ -1.15
COL9A1P20849 PTPRA-204ENST00000380393 3636 ntTSL 1 (best) BASIC7.85□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms