Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
PRKDCP78527 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 AL122016.1-201ENST00000403365 367 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 NDUFA5P1-201ENST00000433858 341 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 DHFRP3-201ENST00000455595 559 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 RPL7P49-201ENST00000471402 708 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 RN7SL429P-201ENST00000479090 223 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 RN7SL489P-201ENST00000486185 223 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 RN7SL327P-201ENST00000488659 223 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC3.35□□□□□ -1.87
PRKDCP78527 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC3.35□□□□□ -1.87
PRKDCP78527 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC3.35□□□□□ -1.87
PRKDCP78527 RN7SL853P-201ENST00000617250 223 ntBASIC3.35□□□□□ -1.87
PRKDCP78527 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.35□□□□□ -1.87
PRKDCP78527 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
PRKDCP78527 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.35□□□□□ -1.87
PRKDCP78527 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
PRKDCP78527 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 AC068533.1-201ENST00000418542 415 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.34□□□□□ -1.87
PRKDCP78527 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC3.34□□□□□ -1.87
PRKDCP78527 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC3.34□□□□□ -1.87
PRKDCP78527 CDH12P2-201ENST00000504393 298 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 CR392039.5-201ENST00000623201 510 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PRKDCP78527 CASC19-243ENST00000641588 1546 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
PRKDCP78527 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC3.34□□□□□ -1.87
PRKDCP78527 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 RN7SKP74-201ENST00000362849 309 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 AL591363.1-201ENST00000450091 483 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.34□□□□□ -1.87
PRKDCP78527 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.34□□□□□ -1.87
PRKDCP78527 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC3.34□□□□□ -1.87
PRKDCP78527 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC3.34□□□□□ -1.87
PRKDCP78527 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC3.34□□□□□ -1.87
PRKDCP78527 AL138721.1-201ENST00000616756 179 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 AC069542.2-201ENST00000624816 216 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 PCDH15-224ENST00000612394 5765 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 AC025574.1-201ENST00000554784 1653 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 CASC19-204ENST00000641001 2055 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 ABCC13-202ENST00000463099 3842 ntBASIC3.34□□□□□ -1.87
PRKDCP78527 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC3.34□□□□□ -1.87
PRKDCP78527 BIVM-ERCC5-201ENST00000602836 5143 ntAPPRIS P5 TSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PRKDCP78527 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
PRKDCP78527 MT-RNR1-201ENST00000389680 954 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 NPM1P36-201ENST00000415681 835 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC3.34□□□□□ -1.88
PRKDCP78527 ARAFP2-201ENST00000440565 559 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 AC104978.1-201ENST00000449387 391 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC3.34□□□□□ -1.88
PRKDCP78527 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.34□□□□□ -1.88
PRKDCP78527 AC015712.7-201ENST00000615211 635 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 AC112484.5-201ENST00000624189 228 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PRKDCP78527 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
PRKDCP78527 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PRKDCP78527 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC3.34□□□□□ -1.88
PRKDCP78527 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 AL583835.1-201ENST00000399570 407 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.34□□□□□ -1.88
PRKDCP78527 AC090804.1-201ENST00000448870 490 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 SETP6-201ENST00000479329 568 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.34□□□□□ -1.88
PRKDCP78527 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 PGBD4P4-201ENST00000509673 613 ntBASIC3.34□□□□□ -1.88
PRKDCP78527 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
PRKDCP78527 RNU6-709P-201ENST00000517257 104 ntBASIC3.34□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms