Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
COL6A3P12111 AP000756.2-201ENST00000624168 2567 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL6A3P12111 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.84□□□□□ -1.63
COL6A3P12111 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 AL353729.2-201ENST00000605859 1249 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 MIR7975-201ENST00000619350 68 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL6A3P12111 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL6A3P12111 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
COL6A3P12111 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
COL6A3P12111 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL6A3P12111 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.84□□□□□ -1.64
COL6A3P12111 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC4.84□□□□□ -1.64
COL6A3P12111 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.84□□□□□ -1.64
COL6A3P12111 PPIAP9-201ENST00000403866 498 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.83□□□□□ -1.64
COL6A3P12111 AL022401.1-201ENST00000619498 108 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 MIR3653-201ENST00000625572 110 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL6A3P12111 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A3P12111 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A3P12111 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL6A3P12111 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 MAPK10-338ENST00000641647 3362 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 PAPPA2-202ENST00000367662 9691 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.83□□□□□ -1.64
COL6A3P12111 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 RNA5-8SP5-201ENST00000365304 152 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.83□□□□□ -1.64
COL6A3P12111 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A3P12111 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A3P12111 AC010460.1-201ENST00000507087 466 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A3P12111 TMEM30CP-203ENST00000637814 1035 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A3P12111 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 MTND5P1-201ENST00000445440 1375 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC4.83□□□□□ -1.64
COL6A3P12111 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A3P12111 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
COL6A3P12111 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A3P12111 CASC19-243ENST00000641588 1546 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 SYF2P2-201ENST00000417620 583 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 MRPL50P1-201ENST00000431951 384 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 AC011742.2-201ENST00000443818 352 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 AC116562.1-201ENST00000485355 781 ntBASIC4.83□□□□□ -1.64
COL6A3P12111 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.83□□□□□ -1.64
COL6A3P12111 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 APBB2-201ENST00000295974 8972 ntAPPRIS ALT1 TSL 2 BASIC4.83□□□□□ -1.64
COL6A3P12111 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC4.83□□□□□ -1.64
COL6A3P12111 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A3P12111 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A3P12111 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.82□□□□□ -1.64
COL6A3P12111 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
COL6A3P12111 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC4.82□□□□□ -1.64
COL6A3P12111 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.82□□□□□ -1.64
COL6A3P12111 SNORA48.2-201ENST00000390926 124 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 ARL4AP5-201ENST00000404372 599 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 TCEA1P4-201ENST00000415066 844 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 AC140479.3-201ENST00000418944 1126 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 CRIP1P1-201ENST00000427567 185 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 RN7SL558P-201ENST00000497468 299 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A3P12111 AC108738.1-201ENST00000603703 237 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.82□□□□□ -1.64
COL6A3P12111 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
COL6A3P12111 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC4.82□□□□□ -1.64
COL6A3P12111 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A3P12111 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A3P12111 SNORA71.2-201ENST00000364941 134 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 DHFRP3-201ENST00000455595 559 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 AL358832.1-201ENST00000497800 389 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A3P12111 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A3P12111 U3.53-201ENST00000628922 216 ntBASIC4.82□□□□□ -1.64
COL6A3P12111 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
COL6A3P12111 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms