Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC106785.1-201ENST00000565935 262 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AL035461.2-201ENST00000619201 524 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC090220.1-201ENST00000593078 1699 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 MAPK10-349ENST00000641767 3661 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 SNORA5.1-201ENST00000384275 131 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 MIR670-201ENST00000390142 98 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 RPL7AP25-201ENST00000423357 805 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 NRBF2P3-201ENST00000432731 865 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC114781.5-201ENST00000615297 108 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 NIPBL-202ENST00000448238 8729 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 ECM1P2-201ENST00000503354 1577 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 U3.10-201ENST00000364459 214 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 ARL4AP5-201ENST00000404372 599 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AL121878.1-201ENST00000418638 859 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 AC015795.1-201ENST00000513669 327 ntBASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
ALMS1Q8TCU4 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 EIF4A2P4-201ENST00000458691 1196 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 RPS12P31-201ENST00000491419 398 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 RPS27AP16-201ENST00000492222 470 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 MRPL49P2-201ENST00000521066 465 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AC003985.2-201ENST00000562268 1669 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AC114755.2-201ENST00000413520 361 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 TMBIM7P-201ENST00000418074 855 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 RPL23AP83-201ENST00000434984 473 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 IMPA1P1-201ENST00000510718 842 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AC026782.2-201ENST00000510845 636 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 LSM3P2-201ENST00000551246 273 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AL049794.2-201ENST00000616301 365 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AC004817.4-201ENST00000602396 3625 ntBASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC3.29□□□□□ -1.88
ALMS1Q8TCU4 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms