Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC8.04□□□□□ -1.12
CUX1P39880 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
CUX1P39880 RPL23AP59-201ENST00000399415 461 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AL354868.1-201ENST00000417077 482 ntBASIC8.03□□□□□ -1.12
CUX1P39880 CYP4F29P-201ENST00000420685 446 ntBASIC8.03□□□□□ -1.12
CUX1P39880 RPS17P8-201ENST00000434525 335 ntBASIC8.03□□□□□ -1.12
CUX1P39880 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC8.03□□□□□ -1.12
CUX1P39880 RPSAP51-201ENST00000497462 645 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AC100784.1-201ENST00000522790 310 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC8.03□□□□□ -1.12
CUX1P39880 AL049536.1-201ENST00000625043 744 ntBASIC8.03□□□□□ -1.12
CUX1P39880 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
CUX1P39880 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC8.03□□□□□ -1.12
CUX1P39880 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 AC025574.1-201ENST00000554784 1653 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
CUX1P39880 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
CUX1P39880 AC002525.1-201ENST00000624392 1622 ntBASIC8.03□□□□□ -1.12
CUX1P39880 SALL4P2-201ENST00000423288 2910 ntBASIC8.03□□□□□ -1.12
CUX1P39880 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 RNA5SP388-201ENST00000362584 119 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC8.03□□□□□ -1.12
CUX1P39880 AC004980.3-201ENST00000447046 365 ntBASIC8.03□□□□□ -1.12
CUX1P39880 PRPF38AP1-201ENST00000451976 933 ntBASIC8.03□□□□□ -1.12
CUX1P39880 RN7SL558P-201ENST00000497468 299 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC8.03□□□□□ -1.12
CUX1P39880 ENPP7P11-201ENST00000505915 627 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC8.03□□□□□ -1.12
CUX1P39880 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC8.03□□□□□ -1.12
CUX1P39880 NPM1P6-201ENST00000521088 871 ntBASIC8.03□□□□□ -1.12
CUX1P39880 PRPF19P1-201ENST00000584766 898 ntBASIC8.03□□□□□ -1.12
CUX1P39880 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
CUX1P39880 VN1R85P-201ENST00000601587 426 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AL020997.2-201ENST00000602607 184 ntBASIC8.03□□□□□ -1.12
CUX1P39880 AC002044.3-201ENST00000623314 541 ntBASIC8.03□□□□□ -1.12
CUX1P39880 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
CUX1P39880 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.12
CUX1P39880 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC8.02□□□□□ -1.13
CUX1P39880 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 RPS27AP12-201ENST00000429552 465 ntBASIC8.02□□□□□ -1.13
CUX1P39880 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC8.02□□□□□ -1.13
CUX1P39880 AC111000.6-201ENST00000514471 709 ntBASIC8.02□□□□□ -1.13
CUX1P39880 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 AC040958.1-201ENST00000561102 201 ntBASIC8.02□□□□□ -1.13
CUX1P39880 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
CUX1P39880 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
CUX1P39880 STX3-208ENST00000641815 3236 ntBASIC8.02□□□□□ -1.13
CUX1P39880 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
CUX1P39880 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 AC034229.2-201ENST00000566945 2508 ntBASIC8.01□□□□□ -1.13
CUX1P39880 AC097063.1-201ENST00000426714 1797 ntBASIC8.01□□□□□ -1.13
CUX1P39880 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 AC007618.1-201ENST00000366455 732 ntBASIC8.01□□□□□ -1.13
CUX1P39880 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC8.01□□□□□ -1.13
CUX1P39880 ARL4AP5-201ENST00000404372 599 ntBASIC8.01□□□□□ -1.13
CUX1P39880 RPL7AP25-201ENST00000423357 805 ntBASIC8.01□□□□□ -1.13
CUX1P39880 RN7SL517P-201ENST00000462240 305 ntBASIC8.01□□□□□ -1.13
CUX1P39880 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 AP000619.2-201ENST00000546014 969 ntBASIC8.01□□□□□ -1.13
CUX1P39880 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC8.01□□□□□ -1.13
CUX1P39880 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC8.01□□□□□ -1.13
CUX1P39880 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC8.01□□□□□ -1.13
CUX1P39880 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC8.01□□□□□ -1.13
CUX1P39880 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC8.01□□□□□ -1.13
CUX1P39880 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC8.01□□□□□ -1.13
CUX1P39880 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC8.01□□□□□ -1.13
CUX1P39880 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC8.01□□□□□ -1.13
CUX1P39880 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC8□□□□□ -1.13
CUX1P39880 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC8□□□□□ -1.13
CUX1P39880 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC8□□□□□ -1.13
CUX1P39880 RNU1-13P-201ENST00000384499 162 ntBASIC8□□□□□ -1.13
CUX1P39880 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC8□□□□□ -1.13
CUX1P39880 FTH1P16-201ENST00000435241 552 ntBASIC8□□□□□ -1.13
CUX1P39880 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC8□□□□□ -1.13
CUX1P39880 RNU6-709P-201ENST00000517257 104 ntBASIC8□□□□□ -1.13
CUX1P39880 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC8□□□□□ -1.13
CUX1P39880 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC8□□□□□ -1.13
CUX1P39880 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC8□□□□□ -1.13
CUX1P39880 AC114781.5-201ENST00000615297 108 ntBASIC8□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms