Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL096803.3-201ENST00000609032 532 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC093388.1-201ENST00000609166 430 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC110792.4-201ENST00000609843 298 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 MIR6826-201ENST00000617808 98 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC009704.2-201ENST00000618739 483 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC005618.4-201ENST00000625053 554 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 METTL8-218ENST00000638989 876 ntTSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AC079776.5-201ENST00000641920 211 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 CASC19-221ENST00000641309 1382 ntBASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC7.06□□□□□ -1.28
CHMP4AQ9BY43 DCN-218ENST00000551354 2924 ntTSL 3 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 ST7-212ENST00000422922 1887 ntTSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 RNA5SP326-201ENST00000363209 110 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 RNA5SP234-201ENST00000363916 119 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AP000534.2-201ENST00000412729 568 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC013404.1-201ENST00000413068 249 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 SLC35E1P1-201ENST00000419313 864 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 CYCSP12-201ENST00000437729 300 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 RANP1-206ENST00000455094 651 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC008410.1-201ENST00000483777 339 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 HIGD1AP18-201ENST00000520730 278 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC005341.1-201ENST00000571086 708 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC015849.2-201ENST00000605738 409 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AL353729.2-201ENST00000605859 1249 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC242628.1-201ENST00000606810 391 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AL133406.3-201ENST00000606817 541 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC100847.1-201ENST00000611316 481 ntBASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
CHMP4AQ9BY43 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 RNU6ATAC18P-201ENST00000408413 101 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 NPM1P24-201ENST00000428039 894 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AL163193.1-201ENST00000444895 788 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 GAPDHP25-201ENST00000447061 1001 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 snoU13.29-201ENST00000459370 104 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 OR9N1P-202ENST00000494289 481 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC090058.1-201ENST00000498788 435 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 PGBD4P4-201ENST00000509673 613 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 SMARCE1P3-201ENST00000553649 1231 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 BLZF2P-201ENST00000553776 1130 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC090312.1-201ENST00000580637 348 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 IMMP1LP3-201ENST00000604197 224 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC000068.2-201ENST00000608816 460 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AL139124.1-201ENST00000609123 421 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AC005840.5-201ENST00000619166 599 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 NEK3-211ENST00000629912 141 ntTSL 5 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 AP001273.1-201ENST00000624493 3152 ntBASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
CHMP4AQ9BY43 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
CHMP4AQ9BY43 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
CHMP4AQ9BY43 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC7.03□□□□□ -1.28
CHMP4AQ9BY43 BCLAF1P2-201ENST00000624956 2609 ntBASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms