Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.65□□□□□ -1.5
HDAC4P56524 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.65□□□□□ -1.5
HDAC4P56524 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 SNORD51.1-201ENST00000365405 77 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 MTND4LP13-201ENST00000425022 298 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC105399.1-202ENST00000447303 205 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AL672138.1-201ENST00000450604 1015 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
HDAC4P56524 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.65□□□□□ -1.5
HDAC4P56524 RPSAP39-201ENST00000467439 883 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 EIF1P7-201ENST00000487533 337 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC067904.2-201ENST00000517322 1283 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.65□□□□□ -1.5
HDAC4P56524 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 AC027176.2-201ENST00000559166 746 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HDAC4P56524 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.65□□□□□ -1.5
HDAC4P56524 AC005776.1-201ENST00000603164 290 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AC004477.3-201ENST00000614061 590 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AL162574.1-201ENST00000615702 950 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 uc_338.7-201ENST00000621834 124 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AC079298.2-201ENST00000623885 459 ntBASIC5.65□□□□□ -1.5
HDAC4P56524 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
HDAC4P56524 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.65□□□□□ -1.51
HDAC4P56524 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HDAC4P56524 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HDAC4P56524 ABCC13-202ENST00000463099 3842 ntBASIC5.65□□□□□ -1.51
HDAC4P56524 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.65□□□□□ -1.51
HDAC4P56524 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.64□□□□□ -1.51
HDAC4P56524 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.64□□□□□ -1.51
HDAC4P56524 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.64□□□□□ -1.51
HDAC4P56524 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
HDAC4P56524 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.64□□□□□ -1.51
HDAC4P56524 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 MIR133B-201ENST00000362210 119 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 RNA5SP319-201ENST00000362768 119 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 AL356057.1-202ENST00000402263 756 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.64□□□□□ -1.51
HDAC4P56524 RPL12P17-201ENST00000432393 498 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 HSFY7P-201ENST00000432672 318 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 HSFY8P-201ENST00000437934 318 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.64□□□□□ -1.51
HDAC4P56524 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.64□□□□□ -1.51
HDAC4P56524 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.64□□□□□ -1.51
HDAC4P56524 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC5.64□□□□□ -1.51
HDAC4P56524 AL157884.3-201ENST00000448273 1184 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 HSFY5P-201ENST00000453726 309 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 SBDSP1-204ENST00000453858 737 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.64□□□□□ -1.51
HDAC4P56524 RN7SL591P-201ENST00000496150 292 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC5.64□□□□□ -1.51
HDAC4P56524 HMGB1P44-201ENST00000508597 572 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 RN7SKP99-201ENST00000517028 307 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 RNA5SP230-201ENST00000517039 122 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AP004607.2-201ENST00000533949 322 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.64□□□□□ -1.51
HDAC4P56524 BLZF2P-201ENST00000553776 1130 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.64□□□□□ -1.51
HDAC4P56524 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.64□□□□□ -1.51
HDAC4P56524 MIR7853-201ENST00000584820 132 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.64□□□□□ -1.51
HDAC4P56524 BNIP3P32-201ENST00000600015 554 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AL589674.2-201ENST00000604304 337 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 FAM72A-208ENST00000607379 1139 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AL135786.2-201ENST00000608422 615 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AC244107.2-201ENST00000611773 76 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 AC084824.5-201ENST00000612009 413 ntBASIC5.64□□□□□ -1.51
HDAC4P56524 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
HDAC4P56524 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.64□□□□□ -1.51
HDAC4P56524 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
HDAC4P56524 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms