Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.25□□□□□ -1.57
HNF4AP41235 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC5.25□□□□□ -1.57
HNF4AP41235 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.25□□□□□ -1.57
HNF4AP41235 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
HNF4AP41235 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.25□□□□□ -1.57
HNF4AP41235 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.25□□□□□ -1.57
HNF4AP41235 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 AL021368.1-201ENST00000607490 540 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 AC016911.1-201ENST00000613297 452 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HNF4AP41235 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC5.25□□□□□ -1.57
HNF4AP41235 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.25□□□□□ -1.57
HNF4AP41235 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HNF4AP41235 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
HNF4AP41235 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.24□□□□□ -1.57
HNF4AP41235 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.24□□□□□ -1.57
HNF4AP41235 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.24□□□□□ -1.57
HNF4AP41235 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.24□□□□□ -1.57
HNF4AP41235 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 RNA5SP319-201ENST00000362768 119 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 DBIP1-201ENST00000401435 260 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.24□□□□□ -1.57
HNF4AP41235 SETP15-201ENST00000412724 337 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 GABARAPL3-201ENST00000412799 354 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 Z93019.1-201ENST00000416450 973 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 RPL7AP49-201ENST00000429522 581 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AL591438.1-201ENST00000433508 581 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.24□□□□□ -1.57
HNF4AP41235 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.24□□□□□ -1.57
HNF4AP41235 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.24□□□□□ -1.57
HNF4AP41235 AC023141.9-201ENST00000458734 412 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 RPS4XP12-201ENST00000461747 709 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 RN7SL174P-201ENST00000475578 289 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.24□□□□□ -1.57
HNF4AP41235 AC008410.1-201ENST00000483777 339 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 RPS24P16-201ENST00000497294 392 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.24□□□□□ -1.57
HNF4AP41235 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.24□□□□□ -1.57
HNF4AP41235 SCARNA16.4-201ENST00000516956 187 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 CDC42P3-201ENST00000518493 633 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 IGKV3D-34-201ENST00000522638 302 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AC087272.1-201ENST00000523624 533 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.24□□□□□ -1.57
HNF4AP41235 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
HNF4AP41235 OR11H3P-201ENST00000554547 982 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.24□□□□□ -1.57
HNF4AP41235 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.24□□□□□ -1.57
HNF4AP41235 AC108738.1-201ENST00000603703 237 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 AC109583.2-201ENST00000617367 129 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
HNF4AP41235 AC135068.5-201ENST00000624197 983 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AP003497.2-201ENST00000624220 967 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AC103798.2-201ENST00000624292 632 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.24□□□□□ -1.57
HNF4AP41235 AC009229.4-201ENST00000623854 1947 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.24□□□□□ -1.57
HNF4AP41235 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HNF4AP41235 AC093535.2-201ENST00000624769 2326 ntBASIC5.24□□□□□ -1.57
HNF4AP41235 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.24□□□□□ -1.57
HNF4AP41235 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HNF4AP41235 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
HNF4AP41235 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HNF4AP41235 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HNF4AP41235 RN7SKP124-201ENST00000364730 341 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.23□□□□□ -1.57
HNF4AP41235 RNA5SP498-201ENST00000411342 120 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.23□□□□□ -1.57
HNF4AP41235 NAP1L4P2-201ENST00000425958 899 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.23□□□□□ -1.57
HNF4AP41235 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.23□□□□□ -1.57
HNF4AP41235 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.23□□□□□ -1.57
HNF4AP41235 AC245517.2-201ENST00000442890 346 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.23□□□□□ -1.57
HNF4AP41235 AC023512.1-201ENST00000444513 499 ntBASIC5.23□□□□□ -1.57
HNF4AP41235 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms