Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRIM53BP-201ENST00000532912 1720 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 ZNF674-207ENST00000523374 4073 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 ASNSP6-201ENST00000592770 1618 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 ZNF410-205ENST00000442160 2076 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 TMEM99-204ENST00000622451 2073 ntAPPRIS P2 TSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 IRAK4-201ENST00000431837 4147 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 MBTPS2-201ENST00000365779 4457 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 VCAM1-204ENST00000370119 2483 ntTSL 2 BASIC6.49□□□□□ -1.37
COL8A1P27658 ZNF200-203ENST00000396871 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL8A1P27658 AC092447.10-201ENST00000620607 1652 ntBASIC6.49□□□□□ -1.37
COL8A1P27658 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 GMFB-209ENST00000616146 4125 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL8A1P27658 CCDC62-203ENST00000392440 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 DDX24-205ENST00000555054 2769 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 AC013268.3-201ENST00000262716 2324 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 VAMP3-201ENST00000054666 2205 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 LINC01105-203ENST00000431188 3329 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC009948.5-201ENST00000624360 4406 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL8A1P27658 SLC37A3-202ENST00000340308 2955 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 U8.3-201ENST00000363321 132 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 RNA5SP114-201ENST00000363780 113 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 SNORA70.5-201ENST00000365519 135 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 RNU2-8P-201ENST00000410727 190 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 RNU6-195P-201ENST00000411352 109 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 BCRP8-201ENST00000412037 255 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC009965.2-201ENST00000425328 970 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 ISCA1P6-201ENST00000427740 390 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC133104.1-201ENST00000429100 218 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 FTLP17-201ENST00000432567 525 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 RPL3P11-201ENST00000434028 1146 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 RPS18P1-201ENST00000447840 458 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 CYCSP44-201ENST00000448560 313 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC079193.1-201ENST00000460497 588 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 AC091564.1-201ENST00000464563 479 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 RPSAP48-201ENST00000466509 889 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 AC135999.1-201ENST00000478962 479 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 RPL7P38-201ENST00000488396 739 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 RN7SL568P-201ENST00000493069 298 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC108078.3-201ENST00000502633 489 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 RPS20-202ENST00000518875 671 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC6.48□□□□□ -1.37
COL8A1P27658 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 AC103968.1-201ENST00000557841 573 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 AC007861.1-201ENST00000576671 674 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 MIR4680-201ENST00000580906 66 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 MIR4428-201ENST00000584884 73 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC008738.6-201ENST00000604605 569 ntTSL 4 BASIC6.48□□□□□ -1.37
COL8A1P27658 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.48□□□□□ -1.37
COL8A1P27658 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC016747.1-201ENST00000420918 2532 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 LINC01630-208ENST00000635680 4363 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 MAPK10-279ENST00000641157 2449 ntBASIC6.48□□□□□ -1.37
COL8A1P27658 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 DDX24-211ENST00000640432 2580 ntTSL 5 BASIC6.48□□□□□ -1.37
COL8A1P27658 AL954650.1-201ENST00000430776 2051 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 TMEM45A-201ENST00000323523 1567 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL8A1P27658 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL8A1P27658 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms