Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 AC016180.1-201ENST00000567945 403 ntBASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 AC027290.2-201ENST00000623210 18662 ntBASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 AC092747.4-201ENST00000620519 1861 ntBASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC112Q8NEF3 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 RN7SKP124-201ENST00000364730 341 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AL391422.1-201ENST00000402155 436 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 BX510359.3-201ENST00000422168 306 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 NMNAT1P2-201ENST00000435192 860 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 FMO7P-201ENST00000436045 768 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 MRPL48P1-201ENST00000445390 636 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AC211433.2-201ENST00000608433 387 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 OR51C1P-202ENST00000641159 1444 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AC092435.4-201ENST00000623012 4159 ntBASIC5.55□□□□□ -1.52
CCDC112Q8NEF3 AC099654.3-201ENST00000447087 1546 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 AC068446.1-201ENST00000556425 1549 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 SNORA2.3-201ENST00000383920 135 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 OR4K12P-201ENST00000406538 961 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 MIR1178-201ENST00000408396 91 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 AL627308.1-201ENST00000435693 821 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 RPS29P10-201ENST00000439197 166 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 RHEBP2-201ENST00000450289 600 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 AC020779.1-201ENST00000478757 796 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 RPL7P39-201ENST00000481157 744 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 uc_338.18-201ENST00000615451 175 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 AL122125.1-201ENST00000616999 600 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 CASC19-206ENST00000641028 1430 ntBASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CCDC112Q8NEF3 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 IL6STP1-201ENST00000346911 1020 ntBASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 RN7SKP162-201ENST00000363605 345 ntBASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 RN7SKP59-201ENST00000410520 314 ntBASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 OR6E1P-201ENST00000414424 923 ntBASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 AL596448.1-201ENST00000415024 392 ntBASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 BMS1P13-201ENST00000417301 885 ntBASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CCDC112Q8NEF3 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms