Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 AC092597.1-201ENST00000487352 616 ntBASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 KRT8P17-201ENST00000453110 1448 ntBASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
COL17A1Q9UMD9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 AC079776.4-201ENST00000511039 504 ntBASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 BX640515.1-201ENST00000617215 977 ntBASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 AC117500.6-201ENST00000624871 588 ntBASIC29.72■■■□□ 2.35
COL17A1Q9UMD9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 HMGN1P19-201ENST00000436976 333 ntBASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 HOTTIP_1.1-201ENST00000620415 57 ntBASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
COL17A1Q9UMD9 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 AL117328.2-201ENST00000624617 1940 ntBASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 AC018553.1-201ENST00000616682 1458 ntBASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC29.7■■■□□ 2.35
COL17A1Q9UMD9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
COL17A1Q9UMD9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.34
COL17A1Q9UMD9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
COL17A1Q9UMD9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC29.7■■■□□ 2.34
COL17A1Q9UMD9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.34
COL17A1Q9UMD9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC29.7■■■□□ 2.34
COL17A1Q9UMD9 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 MIR574-201ENST00000385209 96 ntBASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 AC011498.5-201ENST00000592027 486 ntBASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 AL121672.3-201ENST00000608644 468 ntBASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC29.69■■■□□ 2.34
COL17A1Q9UMD9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 BMF-207ENST00000559701 630 ntTSL 3 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC29.68■■■□□ 2.34
COL17A1Q9UMD9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 PMS2P1-201ENST00000431037 1228 ntBASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 GLRB-205ENST00000512619 728 ntTSL 3 BASIC29.67■■■□□ 2.34
COL17A1Q9UMD9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC29.66■■■□□ 2.34
COL17A1Q9UMD9 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms