Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
VSX1Q9NZR4 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 AC097658.1-201ENST00000475555 843 ntBASIC17.43■□□□□ 0.38
VSX1Q9NZR4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 HLA-B-256ENST00000639848 1089 ntBASIC17.43■□□□□ 0.38
VSX1Q9NZR4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 AL032819.2-201ENST00000624543 2162 ntBASIC17.43■□□□□ 0.38
VSX1Q9NZR4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VSX1Q9NZR4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 AC006557.6-201ENST00000623071 864 ntBASIC17.42■□□□□ 0.38
VSX1Q9NZR4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VSX1Q9NZR4 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 RPS2P52-201ENST00000469610 820 ntBASIC17.41■□□□□ 0.38
VSX1Q9NZR4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VSX1Q9NZR4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VSX1Q9NZR4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms