Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 AL160286.2-201ENST00000567150 934 ntBASIC23.12■■□□□ 1.29
DDX4Q9NQI0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
DDX4Q9NQI0 LGALS8-AS1-201ENST00000487567 1457 ntBASIC23.11■■□□□ 1.29
DDX4Q9NQI0 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.11■■□□□ 1.29
DDX4Q9NQI0 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 WWOX-216ENST00000569818 525 ntBASIC23.11■■□□□ 1.29
DDX4Q9NQI0 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 GABARAPL3-202ENST00000624044 1851 ntBASIC23.11■■□□□ 1.29
DDX4Q9NQI0 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
DDX4Q9NQI0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 DERL1-203ENST00000419562 918 ntTSL 2 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 NTF6B-201ENST00000591913 560 ntBASIC23.1■■□□□ 1.29
DDX4Q9NQI0 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
DDX4Q9NQI0 AC009237.14-201ENST00000609975 1594 ntBASIC23.1■■□□□ 1.29
DDX4Q9NQI0 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 KRT8P41-201ENST00000533985 1514 ntBASIC23.09■■□□□ 1.29
DDX4Q9NQI0 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
DDX4Q9NQI0 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 LIN28AP1-201ENST00000429574 405 ntBASIC23.08■■□□□ 1.29
DDX4Q9NQI0 AC128688.1-201ENST00000487626 519 ntBASIC23.08■■□□□ 1.29
DDX4Q9NQI0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
DDX4Q9NQI0 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms