Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 ATP5G1P1-201ENST00000448724 379 ntBASIC19.06■□□□□ 0.64
LMX1AQ8TE12 AC008040.2-201ENST00000461049 708 ntBASIC19.06■□□□□ 0.64
LMX1AQ8TE12 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 AL137060.1-201ENST00000618151 2648 ntBASIC19.06■□□□□ 0.64
LMX1AQ8TE12 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.06■□□□□ 0.64
LMX1AQ8TE12 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
LMX1AQ8TE12 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 AC073314.1-201ENST00000568729 2216 ntBASIC19.05■□□□□ 0.64
LMX1AQ8TE12 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 TSPY14P-201ENST00000303979 915 ntBASIC19.05■□□□□ 0.64
LMX1AQ8TE12 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 FAM207BP-201ENST00000447172 505 ntBASIC19.05■□□□□ 0.64
LMX1AQ8TE12 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LMX1AQ8TE12 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 AC128688.1-201ENST00000487626 519 ntBASIC19.04■□□□□ 0.64
LMX1AQ8TE12 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 AC010203.1-204ENST00000548782 407 ntBASIC19.04■□□□□ 0.64
LMX1AQ8TE12 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 AC073508.3-201ENST00000619697 1419 ntBASIC19.04■□□□□ 0.64
LMX1AQ8TE12 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LMX1AQ8TE12 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 MFAP1P1-201ENST00000442257 1255 ntBASIC19.03■□□□□ 0.64
LMX1AQ8TE12 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LMX1AQ8TE12 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 INGX-201ENST00000359239 846 ntBASIC19.02■□□□□ 0.64
LMX1AQ8TE12 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.02■□□□□ 0.64
LMX1AQ8TE12 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms