Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 RAP2CP1-201ENST00000605103 478 ntBASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
ZNF540Q8NDQ6 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 KRT16P2-201ENST00000414673 1423 ntBASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 AC009237.14-201ENST00000609975 1594 ntBASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
ZNF540Q8NDQ6 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
ZNF540Q8NDQ6 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms