Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RBM17P1-201ENST00000453646 1190 ntBASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 NME3-204ENST00000563498 920 ntTSL 2 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
SH3RF1Q7Z6J0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 AC007952.6-201ENST00000573168 2673 ntBASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 AC003957.1-201ENST00000625108 2673 ntBASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 AL158211.5-201ENST00000623583 2518 ntBASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.43■■□□□ 1.18
SH3RF1Q7Z6J0 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 AP000525.1-201ENST00000608286 694 ntBASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
SH3RF1Q7Z6J0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 KRT8P17-201ENST00000453110 1448 ntBASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC22.41■■□□□ 1.18
SH3RF1Q7Z6J0 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 KRT16P5-201ENST00000455284 522 ntBASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 DECR2-212ENST00000627716 352 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.4■■□□□ 1.18
SH3RF1Q7Z6J0 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC22.39■■□□□ 1.18
SH3RF1Q7Z6J0 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
SH3RF1Q7Z6J0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
SH3RF1Q7Z6J0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.39■■□□□ 1.18
SH3RF1Q7Z6J0 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 AC113347.1-201ENST00000413321 391 ntBASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
SH3RF1Q7Z6J0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms