Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.82■□□□□ 0.92
USP41Q3LFD5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP41Q3LFD5 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 AP001271.2-201ENST00000624018 1556 ntBASIC20.81■□□□□ 0.92
USP41Q3LFD5 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 KRT8P8-201ENST00000434750 1448 ntBASIC20.81■□□□□ 0.92
USP41Q3LFD5 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 AC004951.3-201ENST00000418645 1148 ntBASIC20.81■□□□□ 0.92
USP41Q3LFD5 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
USP41Q3LFD5 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
USP41Q3LFD5 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 ARMC10P1-201ENST00000313754 855 ntBASIC20.8■□□□□ 0.92
USP41Q3LFD5 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 AC128688.1-201ENST00000487626 519 ntBASIC20.8■□□□□ 0.92
USP41Q3LFD5 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP41Q3LFD5 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
USP41Q3LFD5 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP41Q3LFD5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP41Q3LFD5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP41Q3LFD5 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 AC020907.5-201ENST00000624372 1936 ntBASIC20.79■□□□□ 0.92
USP41Q3LFD5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP41Q3LFD5 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP41Q3LFD5 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.79■□□□□ 0.92
USP41Q3LFD5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP41Q3LFD5 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP41Q3LFD5 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP41Q3LFD5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 LIN28AP1-201ENST00000429574 405 ntBASIC20.78■□□□□ 0.92
USP41Q3LFD5 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 AC008040.2-201ENST00000461049 708 ntBASIC20.78■□□□□ 0.92
USP41Q3LFD5 ECEL1P2-202ENST00000465689 757 ntBASIC20.78■□□□□ 0.92
USP41Q3LFD5 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP41Q3LFD5 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP41Q3LFD5 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USP41Q3LFD5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP41Q3LFD5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP41Q3LFD5 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
USP41Q3LFD5 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP41Q3LFD5 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP41Q3LFD5 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP41Q3LFD5 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP41Q3LFD5 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP41Q3LFD5 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.77■□□□□ 0.92
USP41Q3LFD5 FAM207BP-201ENST00000447172 505 ntBASIC20.77■□□□□ 0.92
USP41Q3LFD5 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
USP41Q3LFD5 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.77■□□□□ 0.92
USP41Q3LFD5 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms