Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZNF444P1-201ENST00000559497 298 ntBASIC20.83■□□□□ 0.92
CHD9Q3L8U1 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 AL732292.2-201ENST00000609649 430 ntBASIC20.83■□□□□ 0.92
CHD9Q3L8U1 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
CHD9Q3L8U1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 CA15P1-201ENST00000481698 905 ntBASIC20.82■□□□□ 0.92
CHD9Q3L8U1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 STARP1-201ENST00000397973 869 ntBASIC20.82■□□□□ 0.92
CHD9Q3L8U1 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 Z98882.1-201ENST00000622160 2253 ntBASIC20.82■□□□□ 0.92
CHD9Q3L8U1 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
CHD9Q3L8U1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 AL022342.1-201ENST00000400363 863 ntBASIC20.81■□□□□ 0.92
CHD9Q3L8U1 TUBB8P6-201ENST00000436895 1288 ntBASIC20.81■□□□□ 0.92
CHD9Q3L8U1 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 AC139530.3-201ENST00000620344 690 ntBASIC20.81■□□□□ 0.92
CHD9Q3L8U1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHD9Q3L8U1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 LINC01311-201ENST00000565162 1445 ntBASIC20.8■□□□□ 0.92
CHD9Q3L8U1 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHD9Q3L8U1 EMBP1-201ENST00000458200 901 ntBASIC20.79■□□□□ 0.92
CHD9Q3L8U1 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.79■□□□□ 0.92
CHD9Q3L8U1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 AL031008.1-201ENST00000619963 541 ntBASIC20.79■□□□□ 0.92
CHD9Q3L8U1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHD9Q3L8U1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 ECEL1P1-201ENST00000373592 1742 ntBASIC20.78■□□□□ 0.92
CHD9Q3L8U1 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CHD9Q3L8U1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 AC244015.2-201ENST00000616358 1861 ntBASIC20.77■□□□□ 0.92
CHD9Q3L8U1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 FBXW4P1-201ENST00000426721 2239 ntBASIC20.77■□□□□ 0.92
CHD9Q3L8U1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.77■□□□□ 0.92
CHD9Q3L8U1 HBZP1-201ENST00000354915 429 ntBASIC20.77■□□□□ 0.92
CHD9Q3L8U1 AP000593.1-201ENST00000393668 712 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms