Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CDH6P55285 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CDH6P55285 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDH6P55285 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CDH6P55285 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
CDH6P55285 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CDH6P55285 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CDH6P55285 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH6P55285 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.32■□□□□ 0.84
CDH6P55285 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.32■□□□□ 0.84
CDH6P55285 UNC93B4-201ENST00000505679 747 ntBASIC20.32■□□□□ 0.84
CDH6P55285 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.32■□□□□ 0.84
CDH6P55285 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH6P55285 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.32■□□□□ 0.84
CDH6P55285 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH6P55285 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.32■□□□□ 0.84
CDH6P55285 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CDH6P55285 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CDH6P55285 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH6P55285 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.31■□□□□ 0.84
CDH6P55285 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH6P55285 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CDH6P55285 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH6P55285 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH6P55285 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH6P55285 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH6P55285 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH6P55285 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
CDH6P55285 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH6P55285 UNC93B5-201ENST00000530315 699 ntBASIC20.31■□□□□ 0.84
CDH6P55285 KRT18P6-201ENST00000555540 1265 ntBASIC20.31■□□□□ 0.84
CDH6P55285 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH6P55285 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH6P55285 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
CDH6P55285 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CDH6P55285 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH6P55285 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH6P55285 Z82202.1-201ENST00000623446 1880 ntBASIC20.3■□□□□ 0.84
CDH6P55285 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH6P55285 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH6P55285 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH6P55285 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.3■□□□□ 0.84
CDH6P55285 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH6P55285 RNA5SP413-201ENST00000516373 109 ntBASIC20.3■□□□□ 0.84
CDH6P55285 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH6P55285 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH6P55285 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
CDH6P55285 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CDH6P55285 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH6P55285 AP006587.1-201ENST00000534129 1502 ntBASIC20.3■□□□□ 0.84
CDH6P55285 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH6P55285 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH6P55285 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH6P55285 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH6P55285 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CDH6P55285 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.29■□□□□ 0.84
CDH6P55285 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.29■□□□□ 0.84
CDH6P55285 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CDH6P55285 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH6P55285 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CDH6P55285 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CDH6P55285 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH6P55285 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.29■□□□□ 0.84
CDH6P55285 AL121829.2-201ENST00000620908 328 ntBASIC20.29■□□□□ 0.84
CDH6P55285 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CDH6P55285 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH6P55285 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
CDH6P55285 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH6P55285 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CDH6P55285 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms