Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC087388.1-201ENST00000571370 1112 ntBASIC20.92■□□□□ 0.94
VCPP55072 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.92■□□□□ 0.94
VCPP55072 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.92■□□□□ 0.94
VCPP55072 AC006557.6-201ENST00000623071 864 ntBASIC20.92■□□□□ 0.94
VCPP55072 RNF165-205ENST00000588679 2904 ntBASIC20.92■□□□□ 0.94
VCPP55072 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.92■□□□□ 0.94
VCPP55072 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
VCPP55072 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.91■□□□□ 0.94
VCPP55072 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.91■□□□□ 0.94
VCPP55072 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
VCPP55072 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.9■□□□□ 0.94
VCPP55072 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.9■□□□□ 0.94
VCPP55072 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.9■□□□□ 0.94
VCPP55072 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
VCPP55072 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 DUX4L26-201ENST00000489078 1255 ntBASIC20.9■□□□□ 0.94
VCPP55072 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.9■□□□□ 0.94
VCPP55072 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.9■□□□□ 0.94
VCPP55072 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
VCPP55072 DPP3P2-201ENST00000416030 1696 ntBASIC20.89■□□□□ 0.94
VCPP55072 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCPP55072 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
VCPP55072 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCPP55072 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCPP55072 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
VCPP55072 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
VCPP55072 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.89■□□□□ 0.93
VCPP55072 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 TERF1P1-201ENST00000311003 1181 ntBASIC20.89■□□□□ 0.93
VCPP55072 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
VCPP55072 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.89■□□□□ 0.93
VCPP55072 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.89■□□□□ 0.93
VCPP55072 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.89■□□□□ 0.93
VCPP55072 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.89■□□□□ 0.93
VCPP55072 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.89■□□□□ 0.93
VCPP55072 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.89■□□□□ 0.93
VCPP55072 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.89■□□□□ 0.93
VCPP55072 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.89■□□□□ 0.93
VCPP55072 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VCPP55072 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.88■□□□□ 0.93
VCPP55072 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.88■□□□□ 0.93
VCPP55072 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VCPP55072 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
VCPP55072 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
VCPP55072 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.88■□□□□ 0.93
VCPP55072 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
VCPP55072 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.88■□□□□ 0.93
VCPP55072 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
VCPP55072 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VCPP55072 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VCPP55072 LINC01568-207ENST00000641790 1380 ntBASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms