Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC28.08■■■□□ 2.09
CLTCL1P53675 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLTCL1P53675 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLTCL1P53675 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC28.08■■■□□ 2.09
CLTCL1P53675 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC28.08■■■□□ 2.09
CLTCL1P53675 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLTCL1P53675 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLTCL1P53675 AC087388.1-201ENST00000571370 1112 ntBASIC28.08■■■□□ 2.09
CLTCL1P53675 AC116562.4-202ENST00000641738 218 ntBASIC28.08■■■□□ 2.09
CLTCL1P53675 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CLTCL1P53675 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLTCL1P53675 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
CLTCL1P53675 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
CLTCL1P53675 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC28.08■■■□□ 2.08
CLTCL1P53675 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC28.07■■■□□ 2.08
CLTCL1P53675 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 ANKRD20A18P-201ENST00000359341 492 ntBASIC28.07■■■□□ 2.08
CLTCL1P53675 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC28.07■■■□□ 2.08
CLTCL1P53675 CD70-202ENST00000423145 881 ntTSL 2 BASIC28.07■■■□□ 2.08
CLTCL1P53675 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC28.07■■■□□ 2.08
CLTCL1P53675 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC28.07■■■□□ 2.08
CLTCL1P53675 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
CLTCL1P53675 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC28.07■■■□□ 2.08
CLTCL1P53675 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CLTCL1P53675 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
CLTCL1P53675 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC28.07■■■□□ 2.08
CLTCL1P53675 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC28.07■■■□□ 2.08
CLTCL1P53675 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
CLTCL1P53675 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
CLTCL1P53675 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC28.06■■■□□ 2.08
CLTCL1P53675 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CLTCL1P53675 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC28.06■■■□□ 2.08
CLTCL1P53675 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CLTCL1P53675 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CLTCL1P53675 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CLTCL1P53675 ISCU-203ENST00000431221 799 ntTSL 2 BASIC28.06■■■□□ 2.08
CLTCL1P53675 CKBP1-201ENST00000565489 1086 ntBASIC28.06■■■□□ 2.08
CLTCL1P53675 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC28.06■■■□□ 2.08
CLTCL1P53675 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CLTCL1P53675 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CLTCL1P53675 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC28.05■■■□□ 2.08
CLTCL1P53675 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC28.05■■■□□ 2.08
CLTCL1P53675 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CLTCL1P53675 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC28.05■■■□□ 2.08
CLTCL1P53675 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC28.05■■■□□ 2.08
CLTCL1P53675 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
CLTCL1P53675 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CLTCL1P53675 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC28.05■■■□□ 2.08
CLTCL1P53675 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CLTCL1P53675 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC28.04■■■□□ 2.08
CLTCL1P53675 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
CLTCL1P53675 CA15P1-201ENST00000481698 905 ntBASIC28.04■■■□□ 2.08
CLTCL1P53675 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC28.04■■■□□ 2.08
CLTCL1P53675 AP003041.3-201ENST00000527151 707 ntBASIC28.04■■■□□ 2.08
CLTCL1P53675 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC28.04■■■□□ 2.08
CLTCL1P53675 AC139887.4-201ENST00000607877 719 ntBASIC28.04■■■□□ 2.08
CLTCL1P53675 AC141257.4-201ENST00000634557 245 ntBASIC28.04■■■□□ 2.08
CLTCL1P53675 AC136944.6-201ENST00000634818 245 ntBASIC28.04■■■□□ 2.08
CLTCL1P53675 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC28.04■■■□□ 2.08
CLTCL1P53675 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CLTCL1P53675 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
CLTCL1P53675 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CLTCL1P53675 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CLTCL1P53675 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CLTCL1P53675 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC28.04■■■□□ 2.08
CLTCL1P53675 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CLTCL1P53675 AC009237.14-201ENST00000609975 1594 ntBASIC28.04■■■□□ 2.08
CLTCL1P53675 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CLTCL1P53675 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC28.03■■■□□ 2.08
CLTCL1P53675 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC28.03■■■□□ 2.08
CLTCL1P53675 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC28.03■■■□□ 2.08
CLTCL1P53675 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CLTCL1P53675 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC28.03■■■□□ 2.08
CLTCL1P53675 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC28.03■■■□□ 2.08
CLTCL1P53675 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC28.02■■■□□ 2.08
CLTCL1P53675 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC28.02■■■□□ 2.08
CLTCL1P53675 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 GABARAPL3-202ENST00000624044 1851 ntBASIC28.02■■■□□ 2.08
CLTCL1P53675 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC28.02■■■□□ 2.08
CLTCL1P53675 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 AL031133.1-201ENST00000406807 723 ntBASIC28.02■■■□□ 2.08
CLTCL1P53675 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC28.02■■■□□ 2.08
CLTCL1P53675 KRT8P11-201ENST00000409686 1436 ntBASIC28.02■■■□□ 2.08
CLTCL1P53675 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC28.02■■■□□ 2.08
CLTCL1P53675 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
CLTCL1P53675 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC28.02■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms