Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.13
CIITAP33076 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.08■■□□□ 1.13
CIITAP33076 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 SNORA78-201ENST00000459373 127 ntBASIC22.08■■□□□ 1.13
CIITAP33076 PENK-204ENST00000518770 863 ntTSL 2 BASIC22.08■■□□□ 1.13
CIITAP33076 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.08■■□□□ 1.13
CIITAP33076 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.08■■□□□ 1.13
CIITAP33076 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
CIITAP33076 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
CIITAP33076 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC22.08■■□□□ 1.12
CIITAP33076 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
CIITAP33076 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CIITAP33076 AC073130.3-201ENST00000624389 2278 ntBASIC22.08■■□□□ 1.12
CIITAP33076 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC22.07■■□□□ 1.12
CIITAP33076 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC22.07■■□□□ 1.12
CIITAP33076 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC22.07■■□□□ 1.12
CIITAP33076 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC22.07■■□□□ 1.12
CIITAP33076 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 FAM197Y1-201ENST00000421178 764 ntBASIC22.07■■□□□ 1.12
CIITAP33076 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC22.07■■□□□ 1.12
CIITAP33076 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.07■■□□□ 1.12
CIITAP33076 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC22.07■■□□□ 1.12
CIITAP33076 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
CIITAP33076 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC22.07■■□□□ 1.12
CIITAP33076 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC22.07■■□□□ 1.12
CIITAP33076 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CIITAP33076 KRT16P1-201ENST00000399124 1418 ntBASIC22.06■■□□□ 1.12
CIITAP33076 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
CIITAP33076 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 TSPY7P-201ENST00000431358 1114 ntBASIC22.06■■□□□ 1.12
CIITAP33076 PPP1R14BP5-201ENST00000440334 435 ntBASIC22.06■■□□□ 1.12
CIITAP33076 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22.06■■□□□ 1.12
CIITAP33076 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.06■■□□□ 1.12
CIITAP33076 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.06■■□□□ 1.12
CIITAP33076 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC22.06■■□□□ 1.12
CIITAP33076 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC22.06■■□□□ 1.12
CIITAP33076 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
CIITAP33076 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CIITAP33076 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CIITAP33076 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CIITAP33076 TREX1-205ENST00000625293 1783 ntBASIC22.05■■□□□ 1.12
CIITAP33076 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22.05■■□□□ 1.12
CIITAP33076 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC22.05■■□□□ 1.12
CIITAP33076 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC22.05■■□□□ 1.12
CIITAP33076 CR392000.1-201ENST00000624770 1228 ntBASIC22.05■■□□□ 1.12
CIITAP33076 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CIITAP33076 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CIITAP33076 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CIITAP33076 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CIITAP33076 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.04■■□□□ 1.12
CIITAP33076 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC22.04■■□□□ 1.12
CIITAP33076 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CIITAP33076 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CIITAP33076 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC22.04■■□□□ 1.12
CIITAP33076 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
CIITAP33076 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC22.04■■□□□ 1.12
CIITAP33076 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CIITAP33076 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CIITAP33076 AC004980.1-204ENST00000429707 299 ntBASIC22.04■■□□□ 1.12
CIITAP33076 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC22.04■■□□□ 1.12
CIITAP33076 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC22.04■■□□□ 1.12
CIITAP33076 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC22.04■■□□□ 1.12
CIITAP33076 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms