Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CD74P04233 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CD74P04233 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CD74P04233 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CD74P04233 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.44■□□□□ 0.22
CD74P04233 NME4-202ENST00000382940 766 ntTSL 3 BASIC16.44■□□□□ 0.22
CD74P04233 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC16.44■□□□□ 0.22
CD74P04233 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.44■□□□□ 0.22
CD74P04233 NME4-211ENST00000620944 1193 ntTSL 2 BASIC16.44■□□□□ 0.22
CD74P04233 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
CD74P04233 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CD74P04233 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.44■□□□□ 0.22
CD74P04233 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CD74P04233 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC16.43■□□□□ 0.22
CD74P04233 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 NOC2LP2-201ENST00000407594 1944 ntBASIC16.43■□□□□ 0.22
CD74P04233 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.43■□□□□ 0.22
CD74P04233 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.43■□□□□ 0.22
CD74P04233 AC096631.2-201ENST00000436136 790 ntBASIC16.43■□□□□ 0.22
CD74P04233 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.43■□□□□ 0.22
CD74P04233 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC16.43■□□□□ 0.22
CD74P04233 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC16.43■□□□□ 0.22
CD74P04233 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC16.43■□□□□ 0.22
CD74P04233 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.43■□□□□ 0.22
CD74P04233 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
CD74P04233 NOC2LP1-202ENST00000452600 2235 ntBASIC16.43■□□□□ 0.22
CD74P04233 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.43■□□□□ 0.22
CD74P04233 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CD74P04233 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
CD74P04233 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CD74P04233 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.42■□□□□ 0.22
CD74P04233 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.42■□□□□ 0.22
CD74P04233 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.42■□□□□ 0.22
CD74P04233 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC16.42■□□□□ 0.22
CD74P04233 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.42■□□□□ 0.22
CD74P04233 AL031432.3-201ENST00000607698 485 ntBASIC16.42■□□□□ 0.22
CD74P04233 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.42■□□□□ 0.22
CD74P04233 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CD74P04233 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CD74P04233 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
CD74P04233 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
CD74P04233 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CD74P04233 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.41■□□□□ 0.22
CD74P04233 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 PCDHB18P-201ENST00000524813 2368 ntBASIC16.41■□□□□ 0.22
CD74P04233 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CD74P04233 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CD74P04233 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC16.41■□□□□ 0.22
CD74P04233 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 HLA-G-202ENST00000376815 851 ntBASIC16.41■□□□□ 0.22
CD74P04233 HLA-G-203ENST00000376818 1127 ntBASIC16.41■□□□□ 0.22
CD74P04233 AC027612.3-201ENST00000413684 1047 ntBASIC16.41■□□□□ 0.22
CD74P04233 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.41■□□□□ 0.22
CD74P04233 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.41■□□□□ 0.22
CD74P04233 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CD74P04233 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.41■□□□□ 0.22
CD74P04233 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.41■□□□□ 0.22
CD74P04233 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CD74P04233 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CD74P04233 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CD74P04233 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.4■□□□□ 0.22
CD74P04233 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms