Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
LDLRP01130 MIR718-201ENST00000390190 70 ntBASIC18.83■□□□□ 0.6
LDLRP01130 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.83■□□□□ 0.6
LDLRP01130 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 AL359736.2-201ENST00000621992 437 ntBASIC18.83■□□□□ 0.6
LDLRP01130 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.83■□□□□ 0.6
LDLRP01130 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LDLRP01130 AC010980.2-201ENST00000587099 1412 ntBASIC18.83■□□□□ 0.6
LDLRP01130 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.83■□□□□ 0.6
LDLRP01130 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.82■□□□□ 0.6
LDLRP01130 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
LDLRP01130 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.82■□□□□ 0.6
LDLRP01130 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.82■□□□□ 0.6
LDLRP01130 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.82■□□□□ 0.6
LDLRP01130 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.82■□□□□ 0.6
LDLRP01130 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.82■□□□□ 0.6
LDLRP01130 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.82■□□□□ 0.6
LDLRP01130 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.82■□□□□ 0.6
LDLRP01130 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LDLRP01130 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.82■□□□□ 0.6
LDLRP01130 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LDLRP01130 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.82■□□□□ 0.6
LDLRP01130 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LDLRP01130 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LDLRP01130 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LDLRP01130 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.81■□□□□ 0.6
LDLRP01130 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.81■□□□□ 0.6
LDLRP01130 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.81■□□□□ 0.6
LDLRP01130 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.81■□□□□ 0.6
LDLRP01130 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.81■□□□□ 0.6
LDLRP01130 MIR4497-201ENST00000583208 89 ntBASIC18.81■□□□□ 0.6
LDLRP01130 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.81■□□□□ 0.6
LDLRP01130 Z82202.1-201ENST00000623446 1880 ntBASIC18.81■□□□□ 0.6
LDLRP01130 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LDLRP01130 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LDLRP01130 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.81■□□□□ 0.6
LDLRP01130 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.8■□□□□ 0.6
LDLRP01130 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.8■□□□□ 0.6
LDLRP01130 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 DPP3P2-201ENST00000416030 1696 ntBASIC18.8■□□□□ 0.6
LDLRP01130 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
LDLRP01130 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.8■□□□□ 0.6
LDLRP01130 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.8■□□□□ 0.6
LDLRP01130 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.8■□□□□ 0.6
LDLRP01130 AL162412.1-201ENST00000567129 965 ntBASIC18.8■□□□□ 0.6
LDLRP01130 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.8■□□□□ 0.6
LDLRP01130 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
LDLRP01130 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.8■□□□□ 0.6
LDLRP01130 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LDLRP01130 AC093503.3-201ENST00000624917 2352 ntBASIC18.79■□□□□ 0.6
LDLRP01130 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LDLRP01130 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms