Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CTDNEP1O95476 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CTDNEP1O95476 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CTDNEP1O95476 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 KRT18P16-201ENST00000510337 1294 ntBASIC22.68■■□□□ 1.22
CTDNEP1O95476 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 AC018445.3-201ENST00000624177 1945 ntBASIC22.68■■□□□ 1.22
CTDNEP1O95476 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
CTDNEP1O95476 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CTDNEP1O95476 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CTDNEP1O95476 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.68■■□□□ 1.22
CTDNEP1O95476 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 AP003097.1-201ENST00000530657 1135 ntBASIC22.67■■□□□ 1.22
CTDNEP1O95476 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 ZNF815P-204ENST00000434898 1737 ntBASIC22.67■■□□□ 1.22
CTDNEP1O95476 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
CTDNEP1O95476 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CTDNEP1O95476 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22.66■■□□□ 1.22
CTDNEP1O95476 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 AC104417.2-201ENST00000562989 1793 ntBASIC22.66■■□□□ 1.22
CTDNEP1O95476 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
CTDNEP1O95476 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC22.65■■□□□ 1.22
CTDNEP1O95476 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
CTDNEP1O95476 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.65■■□□□ 1.22
CTDNEP1O95476 AC026366.1-201ENST00000488803 879 ntBASIC22.65■■□□□ 1.22
CTDNEP1O95476 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.65■■□□□ 1.22
CTDNEP1O95476 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC22.65■■□□□ 1.22
CTDNEP1O95476 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CTDNEP1O95476 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CTDNEP1O95476 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CTDNEP1O95476 KRT8P8-201ENST00000434750 1448 ntBASIC22.65■■□□□ 1.22
CTDNEP1O95476 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CTDNEP1O95476 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CTDNEP1O95476 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC22.64■■□□□ 1.22
CTDNEP1O95476 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
CTDNEP1O95476 SDHAP1-207ENST00000440850 2000 ntBASIC22.64■■□□□ 1.22
CTDNEP1O95476 BX323043.1-201ENST00000641006 1765 ntBASIC22.64■■□□□ 1.22
CTDNEP1O95476 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CTDNEP1O95476 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
CTDNEP1O95476 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CTDNEP1O95476 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CTDNEP1O95476 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.64■■□□□ 1.21
CTDNEP1O95476 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.64■■□□□ 1.21
CTDNEP1O95476 MMAB-206ENST00000540016 945 ntTSL 3 BASIC22.64■■□□□ 1.21
CTDNEP1O95476 MTDHP1-201ENST00000605323 784 ntBASIC22.64■■□□□ 1.21
CTDNEP1O95476 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
CTDNEP1O95476 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
CTDNEP1O95476 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC22.64■■□□□ 1.21
CTDNEP1O95476 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.64■■□□□ 1.21
CTDNEP1O95476 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CTDNEP1O95476 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CTDNEP1O95476 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms