Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.56■□□□□ 0.56
PROM1O43490 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.56■□□□□ 0.56
PROM1O43490 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.56■□□□□ 0.56
PROM1O43490 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PROM1O43490 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
PROM1O43490 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.55■□□□□ 0.56
PROM1O43490 AP006587.1-201ENST00000534129 1502 ntBASIC18.55■□□□□ 0.56
PROM1O43490 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.55■□□□□ 0.56
PROM1O43490 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PROM1O43490 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PROM1O43490 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
PROM1O43490 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.55■□□□□ 0.56
PROM1O43490 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.55■□□□□ 0.56
PROM1O43490 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.55■□□□□ 0.56
PROM1O43490 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.55■□□□□ 0.56
PROM1O43490 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.55■□□□□ 0.56
PROM1O43490 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.55■□□□□ 0.56
PROM1O43490 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.55■□□□□ 0.56
PROM1O43490 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PROM1O43490 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.54■□□□□ 0.56
PROM1O43490 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PROM1O43490 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.54■□□□□ 0.56
PROM1O43490 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.54■□□□□ 0.56
PROM1O43490 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.54■□□□□ 0.56
PROM1O43490 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.54■□□□□ 0.56
PROM1O43490 AC093827.2-201ENST00000512654 315 ntBASIC18.54■□□□□ 0.56
PROM1O43490 AC069544.1-201ENST00000609399 999 ntBASIC18.54■□□□□ 0.56
PROM1O43490 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.54■□□□□ 0.56
PROM1O43490 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
PROM1O43490 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.54■□□□□ 0.56
PROM1O43490 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PROM1O43490 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PROM1O43490 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PROM1O43490 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PROM1O43490 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
PROM1O43490 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.53■□□□□ 0.56
PROM1O43490 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.53■□□□□ 0.56
PROM1O43490 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.53■□□□□ 0.56
PROM1O43490 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.53■□□□□ 0.56
PROM1O43490 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.53■□□□□ 0.56
PROM1O43490 AL020996.1-203ENST00000536896 2307 ntBASIC18.53■□□□□ 0.56
PROM1O43490 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.53■□□□□ 0.56
PROM1O43490 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.53■□□□□ 0.56
PROM1O43490 AC233263.1-201ENST00000578059 224 ntBASIC18.53■□□□□ 0.56
PROM1O43490 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 MTDHP1-201ENST00000605323 784 ntBASIC18.53■□□□□ 0.56
PROM1O43490 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.53■□□□□ 0.56
PROM1O43490 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.53■□□□□ 0.56
PROM1O43490 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PROM1O43490 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.53■□□□□ 0.56
PROM1O43490 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.52■□□□□ 0.56
PROM1O43490 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PROM1O43490 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PROM1O43490 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.52■□□□□ 0.56
PROM1O43490 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PROM1O43490 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PROM1O43490 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PROM1O43490 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms