Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC11O43248 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.94■□□□□ 0.78
HOXC11O43248 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
HOXC11O43248 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.94■□□□□ 0.78
HOXC11O43248 SLC25A1P4-201ENST00000567977 778 ntBASIC19.94■□□□□ 0.78
HOXC11O43248 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC11O43248 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC11O43248 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC11O43248 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC11O43248 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
HOXC11O43248 AC009237.14-201ENST00000609975 1594 ntBASIC19.94■□□□□ 0.78
HOXC11O43248 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC11O43248 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC11O43248 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
HOXC11O43248 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC11O43248 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC11O43248 AL137013.1-201ENST00000432946 1228 ntBASIC19.93■□□□□ 0.78
HOXC11O43248 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.93■□□□□ 0.78
HOXC11O43248 FAM207BP-201ENST00000447172 505 ntBASIC19.93■□□□□ 0.78
HOXC11O43248 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.93■□□□□ 0.78
HOXC11O43248 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC11O43248 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.93■□□□□ 0.78
HOXC11O43248 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
HOXC11O43248 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
HOXC11O43248 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
HOXC11O43248 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
HOXC11O43248 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC11O43248 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.92■□□□□ 0.78
HOXC11O43248 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
HOXC11O43248 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.92■□□□□ 0.78
HOXC11O43248 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 KRT18P57-201ENST00000443599 1254 ntBASIC19.92■□□□□ 0.78
HOXC11O43248 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 AC091390.4-202ENST00000476426 537 ntBASIC19.92■□□□□ 0.78
HOXC11O43248 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.92■□□□□ 0.78
HOXC11O43248 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.92■□□□□ 0.78
HOXC11O43248 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.92■□□□□ 0.78
HOXC11O43248 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HOXC11O43248 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
HOXC11O43248 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 AC073130.3-201ENST00000624389 2278 ntBASIC19.92■□□□□ 0.78
HOXC11O43248 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HOXC11O43248 GABARAPL3-202ENST00000624044 1851 ntBASIC19.92■□□□□ 0.78
HOXC11O43248 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.92■□□□□ 0.78
HOXC11O43248 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
HOXC11O43248 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
HOXC11O43248 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.92■□□□□ 0.78
HOXC11O43248 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC11O43248 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.91■□□□□ 0.78
HOXC11O43248 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 MFAP1P1-201ENST00000442257 1255 ntBASIC19.91■□□□□ 0.78
HOXC11O43248 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.91■□□□□ 0.78
HOXC11O43248 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.91■□□□□ 0.78
HOXC11O43248 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
HOXC11O43248 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.91■□□□□ 0.78
HOXC11O43248 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.9■□□□□ 0.78
HOXC11O43248 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 AL691432.2-201ENST00000607222 2038 ntBASIC19.9■□□□□ 0.78
HOXC11O43248 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HOXC11O43248 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HOXC11O43248 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.9■□□□□ 0.78
HOXC11O43248 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.9■□□□□ 0.78
HOXC11O43248 AC128688.1-201ENST00000487626 519 ntBASIC19.9■□□□□ 0.78
HOXC11O43248 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
HOXC11O43248 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.9■□□□□ 0.78
HOXC11O43248 AL160286.2-201ENST00000567150 934 ntBASIC19.9■□□□□ 0.78
HOXC11O43248 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.9■□□□□ 0.78
HOXC11O43248 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.9■□□□□ 0.78
HOXC11O43248 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HOXC11O43248 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
HOXC11O43248 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HOXC11O43248 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.9■□□□□ 0.78
HOXC11O43248 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC11O43248 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC11O43248 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms