Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.03■□□□□ 0.48
CPSF4LA6NMK7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.02■□□□□ 0.48
CPSF4LA6NMK7 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CPSF4LA6NMK7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CPSF4LA6NMK7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 TNXA-203ENST00000507684 2038 ntBASIC18■□□□□ 0.47
CPSF4LA6NMK7 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CPSF4LA6NMK7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 AC116351.2-201ENST00000606540 1585 ntBASIC18■□□□□ 0.47
CPSF4LA6NMK7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CPSF4LA6NMK7 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CPSF4LA6NMK7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms