Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC53A6NM62 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC53A6NM62 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC53A6NM62 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC53A6NM62 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
LRRC53A6NM62 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC53A6NM62 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC53A6NM62 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.07■□□□□ 0.96
LRRC53A6NM62 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRRC53A6NM62 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRRC53A6NM62 AC005829.2-201ENST00000571422 1056 ntBASIC21.06■□□□□ 0.96
LRRC53A6NM62 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 AL137784.2-201ENST00000607332 1000 ntBASIC21.06■□□□□ 0.96
LRRC53A6NM62 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LRRC53A6NM62 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 MIPEPP3-201ENST00000412105 444 ntBASIC21.05■□□□□ 0.96
LRRC53A6NM62 AL390719.1-204ENST00000412397 1219 ntBASIC21.05■□□□□ 0.96
LRRC53A6NM62 AC073210.2-201ENST00000430369 194 ntBASIC21.05■□□□□ 0.96
LRRC53A6NM62 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 AC124283.5-201ENST00000624661 1809 ntBASIC21.05■□□□□ 0.96
LRRC53A6NM62 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
LRRC53A6NM62 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LRRC53A6NM62 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRC53A6NM62 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LRRC53A6NM62 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRC53A6NM62 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRC53A6NM62 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRC53A6NM62 DUSP5P2-201ENST00000426873 1033 ntBASIC21.04■□□□□ 0.96
LRRC53A6NM62 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LRRC53A6NM62 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.04■□□□□ 0.96
LRRC53A6NM62 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.03■□□□□ 0.96
LRRC53A6NM62 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.03■□□□□ 0.96
LRRC53A6NM62 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.03■□□□□ 0.96
LRRC53A6NM62 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
LRRC53A6NM62 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRC53A6NM62 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.03■□□□□ 0.96
LRRC53A6NM62 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LRRC53A6NM62 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
LRRC53A6NM62 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.03■□□□□ 0.96
LRRC53A6NM62 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 TEX21P-204ENST00000641479 1693 ntBASIC21.02■□□□□ 0.96
LRRC53A6NM62 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 AL161938.1-201ENST00000569833 2180 ntBASIC21.02■□□□□ 0.96
LRRC53A6NM62 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.02■□□□□ 0.96
LRRC53A6NM62 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LRRC53A6NM62 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms