Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV17A0A0B4J275 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV17A0A0B4J275 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.72■□□□□ 0.43
TRAV17A0A0B4J275 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.72■□□□□ 0.43
TRAV17A0A0B4J275 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV17A0A0B4J275 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TRAV17A0A0B4J275 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 LINC01238-205ENST00000567549 1107 ntBASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 NTF6B-201ENST00000591913 560 ntBASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TRAV17A0A0B4J275 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
TRAV17A0A0B4J275 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.42
TRAV17A0A0B4J275 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
TRAV17A0A0B4J275 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 AC020907.5-201ENST00000624372 1936 ntBASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 AC087388.1-201ENST00000571370 1112 ntBASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 AC010653.2-201ENST00000623505 997 ntBASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV17A0A0B4J275 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 AC006011.2-201ENST00000621313 1158 ntBASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV17A0A0B4J275 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 INGX-201ENST00000359239 846 ntBASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 AK4P3-201ENST00000418260 669 ntBASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV17A0A0B4J275 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms