Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC6.87□□□□□ -1.31
MSX1P28360 RERE-203ENST00000400907 2973 ntTSL 5 BASIC6.87□□□□□ -1.31
MSX1P28360 HAVCR2-201ENST00000307851 2907 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
MSX1P28360 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
MSX1P28360 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC6.86□□□□□ -1.31
MSX1P28360 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 NACA-216ENST00000550952 2922 ntTSL 2 BASIC6.86□□□□□ -1.31
MSX1P28360 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
MSX1P28360 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 AC009166.2-201ENST00000624410 2833 ntBASIC6.86□□□□□ -1.31
MSX1P28360 Y_RNA.159-201ENST00000363674 87 ntBASIC6.86□□□□□ -1.31
MSX1P28360 SNORA33.2-201ENST00000365413 134 ntBASIC6.86□□□□□ -1.31
MSX1P28360 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 SNORD15A-201ENST00000384214 148 ntBASIC6.86□□□□□ -1.31
MSX1P28360 RNU6-474P-201ENST00000384243 107 ntBASIC6.86□□□□□ -1.31
MSX1P28360 TXNP7-201ENST00000406296 293 ntBASIC6.86□□□□□ -1.31
MSX1P28360 VN1R8P-201ENST00000407739 893 ntBASIC6.86□□□□□ -1.31
MSX1P28360 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.86□□□□□ -1.31
MSX1P28360 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 AC073136.2-201ENST00000417282 849 ntBASIC6.86□□□□□ -1.31
MSX1P28360 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC6.86□□□□□ -1.31
MSX1P28360 RPL7P57-201ENST00000423238 740 ntBASIC6.86□□□□□ -1.31
MSX1P28360 VDAC2P3-201ENST00000430995 828 ntBASIC6.86□□□□□ -1.31
MSX1P28360 NIP7P1-201ENST00000433227 512 ntBASIC6.86□□□□□ -1.31
MSX1P28360 LIN28AP2-201ENST00000445283 458 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.86□□□□□ -1.31
MSX1P28360 AL591379.2-201ENST00000450223 397 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC6.86□□□□□ -1.31
MSX1P28360 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC6.86□□□□□ -1.31
MSX1P28360 AC063943.1-201ENST00000465434 453 ntBASIC6.86□□□□□ -1.31
MSX1P28360 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC6.86□□□□□ -1.31
MSX1P28360 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.86□□□□□ -1.31
MSX1P28360 RNU6-1170P-201ENST00000515974 106 ntBASIC6.86□□□□□ -1.31
MSX1P28360 IGHV3-63-201ENST00000518422 341 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.86□□□□□ -1.31
MSX1P28360 AC138832.1-201ENST00000522871 556 ntBASIC6.86□□□□□ -1.31
MSX1P28360 OR5D2P-201ENST00000524390 911 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC6.86□□□□□ -1.31
MSX1P28360 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 FAM106CP-201ENST00000582212 507 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.86□□□□□ -1.31
MSX1P28360 AC007136.1-201ENST00000589141 199 ntBASIC6.86□□□□□ -1.31
MSX1P28360 CKS1BP3-201ENST00000600888 237 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AC068790.5-201ENST00000602741 355 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AC008638.3-201ENST00000603341 463 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AL078624.2-201ENST00000605063 554 ntBASIC6.86□□□□□ -1.31
MSX1P28360 CUX2P1-201ENST00000606426 298 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AC090948.1-201ENST00000607464 549 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.86□□□□□ -1.31
MSX1P28360 LRRC2-AS1-201ENST00000599511 2291 ntBASIC6.86□□□□□ -1.31
MSX1P28360 AL512662.1-201ENST00000624850 2251 ntBASIC6.86□□□□□ -1.31
MSX1P28360 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC6.86□□□□□ -1.31
MSX1P28360 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
MSX1P28360 FANCL-201ENST00000233741 1683 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 FANCL-202ENST00000402135 1698 ntAPPRIS ALT1 TSL 2 BASIC6.86□□□□□ -1.31
MSX1P28360 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 AC241584.2-201ENST00000637142 2090 ntBASIC6.86□□□□□ -1.31
MSX1P28360 CAGE1-208ENST00000512086 2537 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
MSX1P28360 AC108467.2-201ENST00000617640 1597 ntBASIC6.86□□□□□ -1.31
MSX1P28360 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
MSX1P28360 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 DBF4P1-201ENST00000412976 1892 ntBASIC6.85□□□□□ -1.31
MSX1P28360 THAP12P7-201ENST00000520248 2290 ntBASIC6.85□□□□□ -1.31
MSX1P28360 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC6.85□□□□□ -1.31
MSX1P28360 AC067968.1-201ENST00000591793 3766 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 PIAS1-201ENST00000249636 8115 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC6.85□□□□□ -1.31
MSX1P28360 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
MSX1P28360 OR51A10P-201ENST00000307165 937 ntBASIC6.85□□□□□ -1.31
MSX1P28360 RNU6-359P-201ENST00000365466 108 ntBASIC6.85□□□□□ -1.31
MSX1P28360 SNORA68-201ENST00000384437 133 ntBASIC6.85□□□□□ -1.31
MSX1P28360 MIR575-201ENST00000385013 94 ntBASIC6.85□□□□□ -1.31
MSX1P28360 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
MSX1P28360 SNORD115.1-201ENST00000391109 76 ntBASIC6.85□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms